Transcriptome Analysis of Rat Lungs Exposed to Moxa Smoke after Acute Toxicity Testing

Table 6

Summary of trimming and read mapping of RNA sequences extracted from lung tissues with or without exposure to moxa smoke.

Sample	Raw reads	Clean reads	Total mapped	Multiple mapped	Uniquely mapped
Control-1	50,173,870	49,796,126	47,428,880 (95.25%)	2,917,603 (5.86%)	44,511,277 (89.39%)
Control-2	46,114,692	45,781,086	42,990,282 (93.9%)	2,799,797 (6.12%)	40,190,485 (87.79%)
Control-3	52,445,922	52,079,738	49,504,389 (95.05%)	3,096,088 (5.94%)	46,408,301 (89.11%)
Control-4	48,545,612	48,217,204	45,990,652 (95.38%)	2,991,351 (6.2%)	42,999,301 (89.18%)
Control-5	50,992,444	50,562,024	48,161,499 (95.25%)	3,224,105 (6.38%)	44,937,394 (88.88%)
Control-6	50,544,782	50,169,430	47,895,334 (95.47%)	3,106,564 (6.19%)	44,788,770 (89.28%)
A-1	44,935,518	44,575,026	42,197,588 (94.67%)	3,049,901 (6.84%)	39,147,687 (87.82%)
A-2	50,700,004	50,338,410	47,993,769 (95.34%)	3,186,028 (6.33%)	44,807,741 (89.01%)
A-3	50,236,082	49,848,242	47,350,398 (94.99%)	3,206,303 (6.43%)	44,144,095 (88.56%)
A-4	48,693,504	48,333,432	45,959,510 (95.09%)	2,982,521 (6.17%)	42,976,989 (88.92%)
A-5	49,146,808	48,759,042	46,340,404 (95.04%)	2,945,158 (6.04%)	43,395,246 (89.0%)
A-6	53,718,716	53,311,266	50,690,875 (95.08%)	3,264,160 (6.12%)	47,426,715 (88.96%)
B-1	55,820,604	55,423,436	52,745,165 (95.17%)	3,614,618 (6.52%)	49,130,547 (88.65%)
B-2	53,589,380	53,111,498	50,506,434 (95.1%)	3,334,875 (6.28%)	47,171,559 (88.82%)
B-3	55,490,490	55,043,366	52,450,686 (95.29%)	3,366,022 (6.12%)	49,084,664 (89.17%)
B-4	49,064,936	48,628,478	46,071,906 (94.74%)	3,156,726 (6.49%)	42,915,180 (88.25%)
B-5	54,094,302	53,605,834	50,848,156 (94.86%)	3,618,857 (6.75%)	47,229,299 (88.1%)
B-6	50,670,142	50,301,200	47,808,555 (95.04%)	3,146,533 (6.26%)	44,662,022 (88.79%)
E-1	48,835,796	48,411,848	46,031,928 (95.08%)	3,079,255 (6.36%)	42,952,673 (88.72%)
E-2	48,866,976	48,537,232	46,117,663 (95.02%)	3,002,555 (6.19%)	43,115,108 (88.83%)
E-3	55,030,908	54,608,348	51,926,672 (95.09%)	3,335,432 (6.11%)	48,591,240 (88.98%)
E-4	51,144,428	50,682,046	48,198,708 (95.1%)	3,001,808 (5.92%)	45,196,900 (89.18%)
E-5	46,247,988	45,888,214	43,493,626 (94.78%)	2,855,318 (6.22%)	40,638,308 (88.56%)
E-6	52,636,034	52,255,560	49,672,774 (95.06%)	3,101,746 (5.94%)	46,571,028 (89.12%)

Note. (1) Sample: sample name. (2) Total reads: the number of filtered sequences (clean reads). (3) Total mapped: the number of clean reads that can be mapped to the genome. (4) Multiple mapped: the number of clean reads with multiple alignment positions on the reference sequence. (5) Unique mapped: clean reads with unique alignment position on the reference sequence.