Coronavirus Host Genomics Study: South Africa (COVIGen-SA)

Table 2

Demographic and clinical variables collected for COVIGen-SA.

Category	Variable
Demographics	Sex
	Ethnicity
	Age at collection
	Nearest town to current residence province of current residence
	Number of people living in current residence
	Number of rooms used for sleeping in current residence
Health information	Smoking behaviour
	Asthma
	Cancer
	Cardiovascular disease
	Diabetes mellitus
	HIV
	Hypertension
	Lung disease (excluding asthma)
	Pulmonary tuberculosis
	Renal disease
	Previous lung or other organ transplants
Medication/treatment (current)	Inhaled corticosteroids
	Chemotherapy, radiation, and/or cancer-related surgery
	Antiretrovirals
	ACE-inhibitors
	Oral steroids
	Tuberculosis treatment
	Dialysis
	Any other chronic medications
Anthropometric measurements	Height
	Weight
	Body mass index
COVID-19 diagnosis	Method of testing
	Date of diagnosis
	Pregnant at diagnosis
COVID-19 symptoms	Cough
	Fatigue/malaise
	Anosmia ageusia
	Shortness of breath
	Sore throat
	Other symptoms
COVID-19 outcomes	Did not seek/require healthcare
	Hospitalised
	Hospitalised—oxygen required
	Hospitalised—ICU
	Hospitalised—ventilation