Research Article
Molecular Surface Mesh Generation by Filtering Electron Density Map
Table 1
Computation times (in s) for different methods. (
from [
32].)
| PDB code | No. atoms | | | LSMS | PyMol | Swiss-PDBV | Chimera | MSMS |
| 1A8R | 26400 | 0.65 | 2.61 | 5.56 | 10.52 | 6.38 | 16.36 | 0.95 | 1H2I | 32318 | 0.72 | 1.83 | 6.50 | 11.37 | 5.25 | 40.04 | 3.03 | 1GTP | 34740 | 0.51 | 2.20 | 6.98 | 13.15 | 4.75 | 67.04 | 9.02 | 1FKA | 34977 | 0.75 | 2.77 | 7.89 | 26.29 | 7.36 | 77.25 | 4.50 | 1GT7 | 42700 | 0.95 | 2.43 | 7.32 | 16.10 | 6.50 | 54.39 | 3.32 | 1GAV | 43335 | 0.55 | 2.54 | 7.05 | 28.86 | 7.71 | 78.35 | 4.22 | 1G3I | 45528 | 0.54 | 2.85 | 8.18 | 19.45 | 6.21 | — | 7.67 | 1PMA | 45892 | 0.40 | 1.97 | 8.23 | 18.67 | 6.72 | — | 12.90 | 1FJG | 51995 | 0.71 | 2.88 | 8.01 | 25.18 | 8.05 | — | 15.11 | 1AON | 58870 | 0.62 | 2.64 | 8.83 | 26.36 | 8.91 | — | 10.87 | 1J0B | 60144 | 0.69 | 3.07 | 6.87 | 32.66 | 7.92 | — | 5.61 | 1OTZ | 68620 | 0.67 | 2.28 | 8.46 | 30.14 | 9.56 | — | 9.03 | 1IR2 | 77088 | 0.65 | 2.88 | 7.09 | 29.31 | 9.55 | 93.87 | 9.49 |
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