International Journal of Biomedical Imaging / 2011 / Article / Tab 1 / Research Article
Protein Surface Characterization Using an Invariant Descriptor Table 1 Ranking the screened proteins according to their similarity to the query protein. Results are shown for the Top 30 hits for one query protein from each of the three groups, using DATASET-A (416 protein chains).
(a) DRC on query protein 1UDI chain I (Group 1) Protein PDB ID Chain Rank Distance 1UDI I 1 0 2ZHX B 2 2.1306 1LQM B 3 2.3509 1LQG C 4 2.4589 2UUG C 5 2.5353 1EUI C 7 2.5920 2ZHX L 8 2.6104 1UGH I 10 2.6349 2UGI A 15 2.6809 1UGI E 16 2.6872 2ZHX H 19 2.6969 2ZHX D 21 2.7006 2ZHX N 22 2.7017 2ZHX J 23 2.7141 1UGI G 25 2.7261 1EMJ A 42 2.7758 2BOO A 45 2.7808 1UGI D 47 2.7868 2OWR B 50 2.7952 2J8X D 61 2.8129 1LQG D 70 2.8263 1Q3F A 90 2.8533 2UUG D 99 2.8675 1UGI A 101 2.8689 2OWR C 110 2.8749 2ZHX F 116 2.885 2OWQ B 129 2.8977 1SSP E 141 2.9115 1UGI C 142 2.9117 2ZHX A 147 2.915
(b) DRC on query protein 1QKN chain A (Group 2) Protein PDB ID Chain Rank Distance 1QKN A 1 0 2J7X A 2 1.3769 2J7Y A 3 1.5753 1QKM A 4 1.6793 1NDE A 5 1.7368 2GIU A 6 1.7371 1L2I A 7 1.7460 1U3R B 8 1.7670 3ERD A 9 1.7683
3OS9 A 10 1.7715 2IOG A 11 1.7738 3LTX C 12 1.7742 1YIM A 13 1.7854 3ERT A 14 1.7966 1U3Q D 15 1.8009 1YY4 A 16 1.8090 2OUZ A 17 1.8126 1YIN A 18 1.8152 1XP6 A 19 1.8260 2AYR A 20 1.8269 3OS8 D 21 1.8311 2QH6 A 22 1.8312 3OSA A 23 1.8367 1L2J A 24 1.8385 2JJ3 A 25 1.8438 1G50 A 26 1.8490 3OS8 A 27 1.8509 2FSZ A 28 1.8518 2QGW A 29 1.8604 1UOM A 30 1.8683
(c) DRC on query protein 1YKR chain A (Group 3) Protein PDB ID Chain Rank Distance 1YKR A 1 0 2UZO A 2 1.0396 2R3O A 3 1.0810 3PXY A 4 1.0846 3PY1 A 5 1.0940 2WMA A 6 1.1389 2IW6 A 7 1.1609 3NS9 A 8 1.2043 3IGG A 9 1.2141 2WFY A 10 1.2179 2C5Y A 11 1.2270 3DDP A 12 1.2280 2J9M A 13 1.2284 2R3J A 14 1.2374 2R3L A 15 1.2402 3PXR A 16 1.2422 2DUV A 17 1.2534 1W8C A 18 1.2586 3DOG A 19 1.2793 2V22 A 20 1.2822 2R3P A 21 1.2883 2V22 C 22 1.2963 3IG7 A 23 1.3207 2JGZ A 24 1.3275 2R64 A 25 1.3303 2WHB A 26 1.3381 2VTN A 27 1.3458 3LFN A 28 1.3476 2WIP A 29 1.3514 2BKZ A 30 1.3580