Table 2
(a) Top 50 hits using DRC for a query protein structure from the EGF family on DATASET-B. Annotations in bold correspond to members of the EGF family, predicted proteins, or uncharacterized proteins

ProteinChainDistanceProtein name annotationRank

2a2qL0.0000COAGULATION FACTOR VII1
2firL1.4925COAGULATION FACTOR VII LIGHT CHAIN2
2zp0L1.5545FACTOR VII LIGHT CHAIN3
1wtgL1.5628COAGULATION FACTOR VII4
1wunL1.5844COAGULATION FACTOR VII5
2b8oL1.6305COAGULATION FACTOR VII LIGHT CHAIN6
2zwlL1.6379FACTOR VII LIGHT CHAIN7
2zzuL1.6536FACTOR VII LIGHT CHAIN8
1wqvL1.6816COAGULATION FACTOR VII9
2ec9L1.6832COAGULATION FACTOR VII10
1danL1.7655BLOOD COAGULATION FACTOR VIIA11
1wssL1.7659COAGULATION FACTOR VII12
2puqL1.7692COAGULATION FACTOR VII13
1fakL1.7934PROTEIN (BLOOD COAGULATION FACTOR VIIA)14
2b7dL1.8024COAGULATION FACTOR VII15
6acnA1.8061ACONITASE16
2aerL1.8120COAGULATION FACTOR VII17
2aeiL1.8164COAGULATION FACTOR VII18
2flrL1.8196COAGULATION FACTOR VII19
3elaL1.8668COAGULATION FACTOR VII LIGHT CHAIN20
1z6jL1.8859COAGULATION FACTOR VII21
2f9bL1.9027COAGULATION FACTOR VII22
3phsA1.9169CELL WALL SURFACE ANCHOR FAMILY PROTEIN23
3n54B1.9263SPORE GERMINATION PROTEIN B324
3qbpB1.9264FUMARASE FUM25
3ma9L1.9367TRANSMEMBRANE GLYCOPROTEIN26
3mt0A1.9921UNCHARACTERIZED PROTEIN PA178927
3lguA2.0004PROTEASE DEGS28
3m7iA2.0071TRANSKETOLASE29
1qfkL2.0096PROTEIN (COAGULATION FACTOR VIIA (LIGHT CHAIN))30
3n9tA2.0169PNPC31
3pxzA2.0235CELL DIVISION PROTEIN KINASE 232
2flbL2.0257COAGULATION FACTOR VII33
3lh1A2.0289PROTEASE DEGS34
3nlcA2.0300UNCHARACTERIZED PROTEIN VP095635
3no5C2.0302UNCHARACTERIZED PROTEIN36
3msqC2.0347PUTATIVE UBIQUINONE BIOSYNTHESIS PROTEIN37
3rykA2.0389DTDP-4-DEHYDRORHSMNOSE 3,5-EPIMERASE38
3m4aA2.0444PUTATIVE TYPE I TOPOISOMERASE39
3n3nB2.0444CATALASE-PEROXIDASE40
2R3GA2.0456CELL DIVISION PROTEIN KINASE 241
2R3IA2.0465CELL DIVISION PROTEIN KINASE 242
3o0rL2.0473ANTIBODY FAB FRAGMENT LIGHT CHAIN43
3n3pB2.0490CATALASE-PEROXIDASE44
3nfhA2.0492DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA4945
3qfkA2.0501UNCHARACTERIZED PROTEIN46
3n5hF2.0517FARNESYL PYROPHOSPHATE SYNTHASE47
3n3oB2.0529CATALASE-PEROXIDASE48
3o78B2.0548CHIMERA PROTEIN OF PEPTIDE OF MYOSIN LIGHT CHAIN SMOOTH MUSCLE, GREEN FLUORESCENT PROTEIN, GREEN FLUORESCENT CALMODULIN49
3luyA2.0570PROBABLE CHORISMATE MUTASE50

(b) Top 50 hits using DRC for a query protein structure from the COX-2 family on DATASET-B. Annotations in bold correspond to members of the COX-2 family, predicted proteins, or uncharacterized proteins

ProteinChainDistanceProtein name annotationRank

2zxwB0.0000CYTOCHROME C OXIDASE SUBUNIT 21
2eilB1.3914CYTOCHROME C OXIDASE SUBUNIT 22
2eijB1.5853CYTOCHROME C OXIDASE SUBUNIT 23
3ag4B1.6147CYTOCHROME C OXIDASE SUBUNIT 24
2dysB1.6991CYTOCHROME C OXIDASE SUBUNIT 25
3ag1B1.8159CYTOCHROME C OXIDASE SUBUNIT 26
2eimB1.8824CYTOCHROME C OXIDASE SUBUNIT 27
3ag2B2.0173CYTOCHROME C OXIDASE SUBUNIT 28
2occB2.0631CYTOCHROME C OXIDASE9
3ablB2.1404CYTOCHROME C OXIDASE SUBUNIT 210
2eikB2.1413CYTOCHROME C OXIDASE SUBUNIT 211
3abmB2.1454CYTOCHROME C OXIDASE SUBUNIT 212
1v55B2.1489CYTOCHROME C OXIDASE POLYPEPTIDE II13
2dyrB2.2044CYTOCHROME C OXIDASE SUBUNIT 214
2einB2.2628CYTOCHROME C OXIDASE SUBUNIT 215
1v54B2.2976CYTOCHROME C OXIDASE POLYPEPTIDE II16
3n56B2.4226INSULIN-DEGRADING ENZYME17
3abkB2.4502CYTOCHROME C OXIDASE SUBUNIT 218
3p42A2.4785PREDICTED PROTEIN19
3r2uB2.4846METALLO-BETA-LACTAMASE FAMILY PROTEIN20
3msuB2.4920CITRATE SYNTHASE21
3ag3B2.4950CYTOCHROME C OXIDASE SUBUNIT 222
3ntdB2.5052FAD-DEPENDENT PYRIDINE NUCLEOTIDE-DISULPHIDE OXIDOREDUCTASE23
3ngiA2.5055DNA POLYMERASE24
7ximB2.5198D-XYLOSE ISOMERASE25
3mjyA2.5206DIHYDROOROTATE DEHYDROGENASE26
3nvaB2.5391CTP SYNTHASE27
3lm3A2.5433UNCHARACTERIZED PROTEIN28
3ppnB2.5511GLYCINE BETAINE/CARNITINE/CHOLINE-BINDING PROTEIN29
3o98B2.5557BIFUNCTIONAL GLUTATHIONYLSPERMIDINE SYNTHETASE/AM30
3pomB2.5558RETINOBLASTOMA-ASSOCIATED PROTEIN31
3nt6B2.5656FAD-DEPENDENT PYRIDINE NUCLEOTIDE-DISULPHIDE OXIDOREDUCTASE32
5lymB2.5690LYSOZYME33
3n1yB2.5728TOLUENE O-XYLENE MONOOXYGENASE COMPONENT34
1occB2.5772CYTOCHROME C OXIDASE35
3lxtD2.5860GLUTATHIONE S TRANSFERASE36
2q70B2.5922ESTROGEN RECEPTOR37
3l49B2.5930ABC SUGAR (RIBOSE) TRANSPORTER, PERIPLASMIC SUBSTRATE-BINDING SUBUNIT38
3pvqA2.5944DIPEPTIDYL-PEPTIDASE VI39
3pufB2.6032RIBONUCLEASE H2 SUBUNIT B40
3mveB2.6077UPF0255 PROTEIN VV1_032841
3ld2B2.6143PUTATIVE ACETYLTRANSFERASE42
3ne6A2.6160DNA POLYMERASE43
3qaeA2.61793-HYDROXY-3-METHYLGLUTARYL-COENZYME A REDUCTASE44
3qh8A2.6197BETA-LACTAMASE-LIKE45
3m3rA2.6215ALPHA-HEMOLYSIN46
3nrbB2.6234FORMYLTETRAHYDROFOLATE DEFORMYLASE47
3n05B2.6240NH(3)-DEPENDENT NAD(+) SYNTHETASE48
3m2lA2.6324ALPHA-HEMOLYSIN49
3pnsB2.6357URIDINE PHOSPHORYLASE50