Research Article
Cryo-Imaging and Software Platform for Analysis of Molecular MR Imaging of Micrometastases
Algorithm 1
Pseudocode to find optimal parameters for cost function using lungs.
Input volumes: MRI Volume (after rigid and affine), cryo Volume | Segment Lungs in both the cryo and MRI volumes | for BE = 0 : 0.005 : 0.1 | for JL = 0 : 0.005 : 0.1 | Perform whole mouse deformable registration using as the cost function | Extract the deformation field for the above transform | Apply the transform on segmented MRI lungs | Save the deformed lungs as a binary volume | Evaluate the volume similarity between the deformed MRI lungs and the reference | cryo lungs | end | end |
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