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Comparative and Functional Genomics
Volume 2008, Article ID 545269, 11 pages
http://dx.doi.org/10.1155/2008/545269
Research Article

Tandemly Arrayed Genes in Vertebrate Genomes

1Department of Computer Science, Virginia Tech, 2050 Torgerson Hall, Blacksburg, VA 24061-0106, USA
2Program in Genetics, Bioinformatics, and Computational Biology, Virginia Tech, 2050 Torgerson Hall, Blacksburg, VA 24061-0106, USA

Received 24 January 2008; Accepted 17 August 2008

Academic Editor: Jeffrey Bennetzen

Copyright © 2008 Deng Pan and Liqing Zhang. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

Citations to this Article [19 citations]

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  • Zongli Luo, and Hennie J. J. van Vuuren, “Functional analyses of PAU genes in Saccharomyces cerevisiae,” Microbiology-Sgm, vol. 155, pp. 4036–4049, 2009. View at Publisher · View at Google Scholar
  • Xavier Darzacq, Jie Yao, Daniel R. Larson, Sebastien Z. Causse, Lana Bosanac, Valeria de Turris, Vera M. Ruda, Timothee Lionnet, Daniel Zenklusen, Benjamin Guglielmi, Robert Tjian, and Robert H. Singer, “Imaging Transcription in Living Cells,” Annual Review of Biophysics, vol. 38, pp. 173–196, 2009. View at Publisher · View at Google Scholar
  • Alberto S. Moraes, Mateus Mondin, Marcelo E. Beletti, Margarida L. R. Aguiar-Perecin, Ana M. A. Guaraldo, and Maria Luiza S. Mello, “Age-related association of rDNA and telomeres with the nuclear matrix in mouse hepatocytes,” Cell Biology International, vol. 34, no. 9, pp. 925–931, 2010. View at Publisher · View at Google Scholar
  • Guanqun Shi, Liqing Zhang, and Tao Jiang, “MSOAR 2.0: Incorporating tandem duplications into ortholog assignment based on genome rearrangement,” BMC Bioinformatics, vol. 11, 2010. View at Publisher · View at Google Scholar
  • Laurence Despons, Philippe V. Baret, Lionel Frangeul, Veronique Leh Louis, Pascal Durrens, and Jean-Luc Souciet, “Genome-wide computational prediction of tandem gene arrays: application in yeasts,” Bmc Genomics, vol. 11, 2010. View at Publisher · View at Google Scholar
  • Laurence Despons, Zlatyo Uzunov, and Veronique Leh Louis, “Tandem gene arrays, plastic chromosomal organizations,” Comptes Rendus Biologies, vol. 334, no. 8-9, pp. 639–646, 2011. View at Publisher · View at Google Scholar
  • Kiyoshi Ezawa, Kazuho Ikeo, Takashi Gojobori, and Naruya Saitou, “Evolutionary Patterns of Recently Emerged Animal Duplogs,” Genome Biology and Evolution, vol. 3, pp. 1119–1135, 2011. View at Publisher · View at Google Scholar
  • Jianguo Lu, Eric Peatman, Haibao Tang, Joshua Lewis, and Zhanjiang Liu, “Profiling of gene duplication patterns of sequenced teleost genomes: evidence for rapid lineage-specific genome expansion mediated by recent tandem duplications,” Bmc Genomics, vol. 13, 2012. View at Publisher · View at Google Scholar
  • Michael B. Walker, Benjamin L. King, and Kenneth Paigen, “Clusters of Ancestrally Related Genes That Show Paralogy in Whole or in Part Are a Major Feature of the Genomes of Humans and Other Species,” Plos One, vol. 7, no. 4, 2012. View at Publisher · View at Google Scholar
  • Zsolt Boldogköi, “Transcriptional interference networks coordinate the expression of functionally related genes clustered in the same genomic loci,” Frontiers in Genetics, vol. 3, 2012. View at Publisher · View at Google Scholar
  • Anupma Sharma, Thomas K. Wolfgruber, and Gernot G. Presting, “Tandem repeats derived from centromeric retrotransposons,” BMC Genomics, vol. 14, no. 1, 2013. View at Publisher · View at Google Scholar
  • Ryosuke Kaneko, Manabu Abe, Takahiro Hirabayashi, Arikuni Uchimura, Kenji Sakimura, Yuchio Yanagawa, and Takeshi Yagi, “Expansion of stochastic expression repertoire by tandem duplication in mouse Protocadherin-alpha cluster,” Scientific Reports, vol. 4, 2014. View at Publisher · View at Google Scholar
  • Jinhuan Li, Jia Shou, Ya Guo, Yuanxiao Tang, Yonghu Wu, Zhilian Jia, Yanan Zhai, Zhifeng Chen, Quan Xu, and Qiang Wu, “Efficient inversions and duplications of mammalian regulatory DNA elements and gene clusters by CRISPR/Cas9,” Journal of Molecular Cell Biology, vol. 7, no. 4, pp. 284–298, 2015. View at Publisher · View at Google Scholar
  • Daniel Blanco-Melo, Siddarth Venkatesh, and Paul D. Bieniasz, “Origins and Evolution of tetherin, an Orphan Antiviral Gene,” Cell Host & Microbe, 2016. View at Publisher · View at Google Scholar
  • Xu-Dong Zou, Xue-Jia Hu, Jing Ma, Tuan Li, Zhi-Qiang Ye, and Yun-Dong Wu, “Genome-wide Analysis of WD40 Protein Family in Human,” Scientific Reports, vol. 6, no. 1, 2016. View at Publisher · View at Google Scholar
  • D. Lang, N. van Gessel, K. K. Ullrich, R. Reski, D. Lang, N. van Gessel, K. K. Ullrich, and R. Reski, “The Genome of the Model Moss Physcomitrella patens,” Genomes And Evolution Of Charophytes, Bryophytes, Lycophytes And Ferns, vol. 78, pp. 97–140, 2016. View at Publisher · View at Google Scholar
  • Hugues Roest Crollius, and Joseph M.E.X. Lucas, “High precision detection of conserved segments from synteny blocks,” PLoS ONE, vol. 12, no. 7, 2017. View at Publisher · View at Google Scholar
  • Laurence Schaeffer, Damien Maréchal, Abdel Ayadi, Tania Sorg, Guillaume Pavlovic, Yann Hérault, Marie-Christine Birling, Philippe André, and Loic Lindner, “Efficient and rapid generation of large genomic variants in rats and mice using CRISMERE,” Scientific Reports, vol. 7, 2017. View at Publisher · View at Google Scholar
  • Shuaisheng Feng, Yan Zhang, Zixia Zhao, Peng Xu, Yanliang Jiang, Yiwen Gong, Shangqi Li, and Mou Hu, “Genome-wide characterization of Toll-like receptor gene family in common carp (Cyprinus carpio) and their involvement in host immune response to Aeromonas hydrophila infection,” Comparative Biochemistry and Physiology - Part D: Genomics and Proteomics, vol. 24, pp. 89–98, 2017. View at Publisher · View at Google Scholar