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Comparative and Functional Genomics
Volume 2009, Article ID 379317, 6 pages
http://dx.doi.org/10.1155/2009/379317
Research Article

Evolutionary Conservation Levels of Subunits of Histone-Modifying Protein Complexes in Fungi

Agricultural Bioinformatics Research Unit, Graduate School of Agricultural and Life Sciences, The University of Tokyo, 1-1-1 Yayoi, Bunkyo-ku, Tokyo 113-8657, Japan

Received 20 August 2008; Revised 17 November 2008; Accepted 17 February 2009

Academic Editor: Graziano Pesole

Copyright © 2009 Hiromi Nishida. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

Linked References

  1. B. D. Strahl and C. D. Allis, “The language of covalent histone modifications,” Nature, vol. 403, no. 6765, pp. 41–45, 2000. View at Publisher · View at Google Scholar
  2. T. Jenuwein and C. D. Allis, “Translating the histone code,” Science, vol. 293, no. 5532, pp. 1074–1080, 2001. View at Publisher · View at Google Scholar
  3. R. L. Tatusov, M. Y. Galperin, D. A. Natale, and E. V. Koonin, “The COG database: a tool for genome-scale analysis of protein functions and evolution,” Nucleic Acids Research, vol. 28, no. 1, pp. 33–36, 2000. View at Publisher · View at Google Scholar
  4. K. K. Lee and J. L. Workman, “Histone acetyltransferase complexes: one size doesn't fit all,” Nature Reviews Molecular Cell Biology, vol. 8, no. 4, pp. 284–295, 2007. View at Publisher · View at Google Scholar
  5. C. Martin and Y. Zhang, “The diverse functions of histone lysine methylation,” Nature Reviews Molecular Cell Biology, vol. 6, no. 11, pp. 838–849, 2005. View at Publisher · View at Google Scholar
  6. C. B. Millar and M. Grunstein, “Genome-wide patterns of histone modifications in yeast,” Nature Reviews Molecular Cell Biology, vol. 7, no. 9, pp. 657–666, 2006. View at Publisher · View at Google Scholar
  7. M. Kanehisa, S. Goto, M. Hattori et al., “From genomics to chemical genomics: new developments in KEGG,” Nucleic Acids Research, vol. 34, database issue, pp. D354–D357, 2006. View at Publisher · View at Google Scholar
  8. K. Tamura, J. Dudley, M. Nei, and S. Kumar, “MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0,” Molecular Biology and Evolution, vol. 24, no. 8, pp. 1596–1599, 2007. View at Publisher · View at Google Scholar
  9. J. Felsenstein, PHYLIP (Phylogeny Inference Package), version 3.67, Department of Genome Sciences and Department of Biology, University of Washington, Seattle, Wash, USA.
  10. G. S. Winkler, A. Kristjuhan, H. Erdjument-Bromage, P. Tempst, and J. Q. Svejstrup, “Elongator is a histone H3 and H4 acetyltransferase important for normal histone acetylation levels in vivo,” Proceedings of the National Academy of Sciences of the United States of America, vol. 99, no. 6, pp. 3517–3522, 2002. View at Publisher · View at Google Scholar
  11. B. Ø. Wittschieben, G. Otero, T. de Bizemont et al., “A novel histone acetyltransferase is an integral subunit of elongating RNA polymerase II holoenzyme,” Molecular Cell, vol. 4, no. 1, pp. 123–128, 1999. View at Publisher · View at Google Scholar
  12. B. Ø. Wittschieben, J. Fellows, W. Du, D. J. Stillman, and J. Q. Svejstrup, “Overlapping roles for the histone acetyltransferase activities of SAGA and Elongator in vivo,” EMBO Journal, vol. 19, no. 12, pp. 3060–3068, 2000. View at Publisher · View at Google Scholar
  13. D. S. Hibbett, M. Binder, J. F. Bischoff et al., “A higher-level phylogenetic classification of the Fungi,” Mycological Research, vol. 111, no. 5, pp. 509–547, 2007. View at Publisher · View at Google Scholar
  14. Q. Feng, H. Wang, H. H. Ng et al., “Methylation of H3-lysine 79 is mediated by a new family of HMTases without a SET domain,” Current Biology, vol. 12, no. 12, pp. 1052–1058, 2002. View at Publisher · View at Google Scholar