An Exon-Based Comparative Variant Analysis Pipeline to Study the Scale and Role of Frameshift and Nonsense Mutation in the Human-Chimpanzee Divergence

Table 1

Eight assembled/partially assembled mammalian genomes.

Genomes	Version	Species symbol	Commonname	Assembled chromosomes	Exon
Homo sapiens	NCBI36.46	HS	Human	1-22, X, Y, MT, c22-H2, c5-H2, c6-COX, c6-QBL	267971
Pan troglodytes	CHIMP2.1.46	PT	Chimpanzee	1, 2A, 2B, 3-22, X, Y, MT, nonchrom	236891
Rhesus macaque	MMUL_1.46	RW	Macaque	1-20, X, MT, nonchrom	242505
Mus musculus	NCBIM36.46	MM	Mouse	1-19, X, Y, MT, nonchrom,	229909
Rattus norvegicus	RGSC3.4.46	RN	Rat	1-20, X, MT, nonchrom	241761
Canis familiaris	BROADD2.46	CF	Dog	1-38, X, MT, nonchrom	211964
Bos taurus	Btau_3.1.46	BT	Cow	1-30, nonchrom	215534
Monodelphis domestica	BROADO5.46	MD	Opossum	1-8, X, MT, Un, nonchrom	244769