Research Article
Factors Affecting Splicing Strength of Yeast Genes
Table 2
Yeast genes whose first exon (i.e., the coding part of the first exon) is shorter than five nucleotides.
| | Gene | PWM* | 1st Exon len | Sequence |
| | BET4 | 4.2977 | 3 | AUG | | BOS1 | 3.5760 | 3 | AUG | | DCN1 | 6.5363 | 3 | AUG | | MND1 | 8.1685 | 3 | AUG | | MPT5 | 8.5055 | 3 | AUG | | PSP2 | 8.4546 | 4 | AUGG | | QCR9 | 5.7592 | 3 | AUG | | RPL13A | 6.9991 | 4 | AUGG | | RPL13B | 8.6752 | 4 | AUGG | | RPL19A | 6.9298 | 2 | AU | | RPL19B | 11.7762 | 2 | AU | | RPL20A | 9.7145 | 1 | A | | RPL20B | 8.0214 | 1 | A | | RPL2A | 12.0769 | 4 | AUGG | | RPL2B | 9.7326 | 4 | AUGG | | RPL30 | 8.1799 | 3 | AUG | | RPL35A | 7.3834 | 3 | AUG | | RPL35B | 7.8326 | 3 | AUG | | RPL42A | 9.2392 | 4 | AUGG | | RPL42B | 7.0558 | 4 | AUGG | | RPL43A | 9.9976 | 2 | AU | | RPL43B | 12.0547 | 2 | AU | | RPS17A | 9.1269 | 3 | AUG | | RPS17B | 10.1283 | 3 | AUG | | RPS24A | 9.4227 | 3 | AUG | | RPS24B | 11.3548 | 3 | AUG | | RPS27A | 6.3612 | 3 | AUG | | RPS27B | 10.3823 | 3 | AUG | | RPS30A | 10.8845 | 3 | AUG | | RPS30B | 6.2290 | 3 | AUG | | UBC12 | 8.4505 | 3 | AUG | | VMA10 | 8.2722 | 3 | AUG | | YSF3 | 7.1596 | 3 | AUG |
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*Position weight matrix score at 3′ ss.
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