Applications of Different Weighting Schemes to Improve Pathway-Based Analysis

Table 12

Type II diabetes pathways whose ranks are significantly changed under RWM in the random forests.

Pathway ID and name	Ranks		OOB (%)
	Uniform	RWM	Uniform	RWM
PID 113 Limonene and pinene degradation	184	2	0.54	0.14
PID 106 Inositol metabolism	259	4	0.69	0.17
PID 164 MAP00480_Glutathione_metabolism(user defined)	242	4	0.63	0.17
PID 176 MAP00550_Peptidoglycan_biosynthesis(user defined)	259	4	0.66	0.17
PID 235 Peptidoglycan biosynthesis	259	4	0.66	0.17