Applications of Different Weighting Schemes to Improve Pathway-Based Analysis

Table 5

Five new significant type II diabetes pathways selected in the global test under absT scheme: 𝑃 values and ranks of them are compared to those under uniform weight.

Pathway name	𝑃-values		Ranks
	Uniform	absT	Uniform	absT
(PID = 13) Apoptosis	.3658	.0003	111	2
(PID = 66) Cell cycle	.4871	.0007	155	9
(PID = 51) c3_U133_probes	.3822	.0007	116	9
(PID = 109) Integrin-mediated cell adhesion	.3876	.0007	119	9
(PID = 43) c22_U133_probes	.3599	.0010	107	15