Table of Contents Author Guidelines Submit a Manuscript
Comparative and Functional Genomics
Volume 2012, Article ID 170208, 7 pages
http://dx.doi.org/10.1155/2012/170208
Research Article

Intron Retention and TE Exonization Events in ZRANB2

1National Primate Research Center, Korea Research Institute of Bioscience and Biotechnology, Ochang, Chungbuk 363-883, Republic of Korea
2Department of Biological Sciences, College of Natural Sciences, Pusan National University, Busan 609-735, Republic of Korea
3National Primate Research Center, Korea Research Institute of Bioscience and Biotechnology, University of Science & Technology, Ochang, Chungbuk 363-883, Republic of Korea

Received 23 March 2012; Revised 14 May 2012; Accepted 14 May 2012

Academic Editor: Kyudong Han

Copyright © 2012 Sang-Je Park et al. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

Abstract

The Zinc finger, RAN-binding domain-containing protein 2 (ZRANB2), contains arginine/serine-rich (RS) domains that mediate its function in the regulation of alternative splicing. The ZRANB2 gene contains 2 LINE elements (L3b, Plat_L3) between the 9th and 10th exons. We identified the exonization event of a LINE element (Plat_L3). Using genomic PCR, RT-PCR amplification, and sequencing of primate DNA and RNA samples, we analyzed the evolutionary features of ZRANB2 transcripts. The results indicated that 2 of the LINE elements were integrated in human and all of the tested primate samples (hominoids: 3 species; Old World monkey: 8 species; New World monkey: 6 species; prosimian: 1 species). Human, rhesus monkey, crab-eating monkey, African-green monkey, and marmoset harbor the exon derived from LINE element (Plat_L3). RT-PCR amplification revealed the long transcripts and their differential expression patterns. Intriguingly, these long transcripts were abundantly expressed in Old World monkey lineages (rhesus, crab-eating, and African-green monkeys) and were expressed via intron retention (IR). Thus, the ZRANB2 gene produces 3 transcript variants in which the Cterminus varies by transposable elements (TEs) exonization and IR mechanisms. Therefore, ZRANB2 is valuable for investigating the evolutionary mechanisms of TE exonization and IR during primate evolution.