mRNA 3′ End Processing Factors: A Phylogenetic Comparison

Table 3

Homologs of human polyadenylation factors in nematode, plants, yeast, and archaea. Protein sequences of basal polyadenylation factors from human were compared to other species found in Table 1 to find the homologous factors.

	Human	Nematode	Rice	Thale cress	Wine grape	Fission yeast	Budding yeast	Archaea
CPSF complex	CPSF1	CPSF-1	Os04g0252200	CPSF160	LOC100256706	CFT1	CFT1p
	CPSF2	CPSF-2	Os09g0569400	CPSF100	LOC100267865	CFT2	CFT2p	EPF1
	CPSF3	CPSF-3	Os03g0852900	CPSF73-I	LOC100261042	YSH1	YSH1	EPF2
				CPSF73-II
	CPSF4 isoform 1	CPSF-4	Os06g0677700	CPSF30	LOC100253258	YTH1	YTH1
	CPSF4 isoform 2
	FIP1L1 isoform 1	F32D1.9	Os01g0377500	FIP1[V]	LOC100251960	SPAC22G7.10	Fip1p
	FIP1L1 isoform 2
	FIP1L1 isoform 3
	CstF complex	CSTF1 isoform 1	CPF-1	Os03g0754900	AT5G60940	LOC100267233
		CSTF1 isoform 2
CSTF1 isoform 3
CSTF2		CPF-2	Os11g0176100	CSTF64	LOC100256296	CTF1	RNA15
CSTF2T
CSTF3 isoform 1		SUF-1	Os12g0571900	CSTF77	LOC100262033	RNA14	RNA14
CSTF3 isoform 2
CSTF3 isoform 3
CF1m	CPSF6	D1046.1	Os09g0476100	AT5G55670	LOC100268141
	CSPF7			AT1G13190
	NUDT21	F43G9.5	Os04g0683100	AT4G25550	LOC100261950 isoform 1
				CFIIM-25	LOC100261950 isoform 2
CFIIm	CLP1	F59A2.4	Os02g0217500	CLPS5	LOC100242380	SPAC22H10.05c	Clp1p
	PCF11	R144.2	Os09g0566100	PCFS4	LOC100251089	SPAC4G9.04c	PCF11
	Other factors	PAPOLA	Pap-1	Os06g0319600	PAPS1	LOC100252483	Pla1	Pap1
PAPOLB			Os06g0558700	PAPS2	LOC100263460
PAPOLG
SYMPK		F25G6.2	Os07g0693900	ESP4	LOC100266091	PTA1	PTA1
PABP		PABPC1	PAB-1	Os08g0314800	PAB2	LOC100262903	PABP	PAB1
		PABPC3			PABP5	LOC100255846
	PABPC4			PAB5	LOC100255846
	PABPN1	PABP-2	Os06g0219600	AT5G10350	LOC100242522	PAB2	SGN1
Homologs of yeast polyadenylation factors	WDR33	R06A4.9	Os04g0599800	FY	LOC100263567	PFS2	PFS2
	RBBP6	TAG-214	Os10g0431000	AT5G47430	LOC100252571	SPBP8B7.15c	MPE1
	PPP1CA	GSP-2	OS03g0268000	TOPP7	LOC100256994	DIS2	GLC7
	PPP1CB	GSP-1	Os06g0164100	TOPP4	LOC100258649	DIS2	GLC7