International Journal of Genomics / 2012 / Article / Tab 4 / Research Article
mRNA 3′ End Processing Factors: A Phylogenetic Comparison Table 4 Phylogenetic comparison of human basal polyadenylation factors. Human basal polyadenylation factors were compared to homologous factors in other species by two criteria: percent length is the change in the number of amino acids as compared to the specific human polyadenylation factor. Positive identity is the percentage of amino acids that align to the human polyadenylation factor that are the same or similar to amino acids.
Species Homolog % length % positive Identity CPSF1 Mouse CPSF1 100 98 Chicken LOC770075 5 91
Fly CPSF160 iso. A 101 63 CPSF160 iso. B 98 61 Mosquito AGAP011340-PA 99 65 Purple sea urchin LOC584773 85 70 Trypanosome (T. cruzi ) Tc00.1047053506871.140 100 41 Trypanosome (T. brucei ) Tb11.01.6170 100 41 Nematode Cpsf-1 101 52 Rice Os04g0252200 30 57 Thale cress CPSF160 100 50 Wine grape LOC100256706 100 49 Fission yeast CTF1 100 46 Budding yeast CTF1 94 44 CPSF2 Mouse CPSF2 100 99 Chicken CPSF2 100 97
Fly CPSF100 iso. A 97 69 CPSF100 iso. B 85 68 Mosquito AGAP002474-PA 95 71 Purple sea urchin LOC582050 99 75 Trypanosome (T. cruzi ) Tc00.1047053504109.110 103 42 Trypanosome (T. brucei ) Tb11.03.0910 105 42 Nematode CPSF-2 108 60 Rice Os09g0569400 94 56 Thale cress CPSF100 95 57 Wine grape LOC100267865 95 62 Fission yeast CFT2 102 49 Budding yeast CFT2 110 46 Archaea (H. volcanii ) EPF1 82 40 CPSF3 Mouse CPSF3 100 99 Chicken CSPF3 101 97 Fly CPSF73 100 79 Mosquito AGAP001224-PA 85 88 Purple sea urchin LOC591455 24 89 Trypanosome (T. cruzi ) Tc00.1047053511003.221 63 78 Trypanosome (T. brucei ) Tb927.4.1340 113 73 Nematode CPSF-3 103 75 Rice Os03g0852900 102 72
Thale cress CPSF73-I 101 72 CPSF73-II 90 72 Wine grape LOC100261042 101 72 Fission yeast YSH1 113 67 Budding yeast YSH1 114 60 Archaea EPF2 60 45 CPSF4 Mouse CPSF4 82 75 Chicken CPSF4 90 88 Fly Clp 110 64 Mosquito AGAP005735-PA 290 47 Purple sea urchin LOC765046 109 66 Trypanosome (T. cruzi ) Tc00.1047053511555.40 101 48 Trypanosome (T. brucei ) Tb11.01.4600 103 48 Nematode CPSF-4 112 62 Rice Os06g0677700 273 64 Thale cress CPSF30 102 52 Wine grape LOC100253258 275 67 Fission yeast YTH1 63 72 Budding yeast Yth1p 78 64 FIP1L1 Mouse FIP1L 98 92 Chicken FIP1L 130 88 Fly FIP1 118 58 Mosquito AGAP001514-PA 96 63 Purple sea urchin LOC580164 142 60 Trypanosome (T. cruzi ) Tc00.1047053507601.80 48 60 Trypanosome (T. brucei ) Tb927.5.4320 47 65 Nematode F32D1.9 86 79 Rice Os01g0377500 73 58 Thale cress FIP1[V] 203 68 Wine grape LOC100251960 251 89 Fission yeast SPAC22G7.10 58 82 Budding yeast Fip1 55 52 CstF1 Mouse Cstf1 100 99 Chicken Cstf1 125 99
Fly CstF-50 isoform A 98 87 CstF-50 isoform B 74 65 Mosquito AGAP002776-PA 93 72 Purple sea urchin LOC582854 95 74 Trypanosome (T. cruzi ) Tc00.1047053511365.10 121 42 Trypanosome (T. brucei ) Tb10.61.0570 120 43 Nematode cpf-1 100 69 Rice Os03g0754900 109 58 Thale cress AT5G60940 100 57 Wine grape LOC100267233 113 57 CstF2 Mouse CSTF2 101 96 Chicken CSTF2 82 70 Fly CstF-64 73 82 Mosquito AGAP010918-PA 68 81 Purple sea urchin LOC759858 118 75 Trypanosome (T. cruzi ) Tc00.1047053506795.10 59 62 Trypanosome (T. brucei ) Tb927.7.3730 59 63 Nematode cpf-2 62 73 Rice OSs11g0176100 88 55 Thale cress CSFF64 80 47 Wine grape LOC100256296 94 49 Fission yeast CFT1 63 73 Budding yeast RNA15 51 75 CstF2T Mouse CSTF2t 103 93 CstF3 Mouse Cstf3 100 99 Chicken Cstf3 100 99 Fly su(f) 102 74 Mosquito AGAP003019-PA 710 75
Purple sea urchin LOC591939 78 87 LOC582899 90 74 Nematode Suf-1 103 68 Rice Os12g0571900 709 71 Thale cress CSTF77 713 71 Wine grape LOC100262033 747 69 Fission yeast RNA14 102 52 Budding yeast RNA14 94 49 CPSF6 Mouse CPSF6 100 99 Chicken CPSF6 100 98 Fly CG7185 118 94 Mosquito AGAP005062-PA 117 64 Purple sea urchin LOC577326 163 62 Nematode D1046.1 89 43 Rice Os09g0475100 110 60 Thale cress AT5G55670 106 50 Wine grape LOC100268141 116 51 CPSF7 Mouse CPSF7 100 99 Chicken CPSF7 98 92 Thale cress AT1G13190 122 46 NUDT21 Mouse NUDT21 100 99 Chicken AMFR 336 99
Fly CG3689 isoform B 89 83 CG3689 isoform C 104 85 Mosquito AGAP007242-PA 102 86 Purple sea urchin LOC579716 100 96
Trypanosome (T. cruzi ) Tc00.1047053509509.40 129 51 Tc00.1047053508207.220 129 51 Trypanosome (T. brucei ) Tb927.7.1620 132 49 Nematode F43G9.5 100 84 Rice Os04g0683100 114 73
Thale cress AT4G25550 88 73 CFIM-25 98 67
Wine grape LOC100261950 isoform 1 88 73 LOC100261950 isoform 2 92 70 Clp1 Mouse Clp1 100 99 Chicken Clp1 100 98 Fly cbc 99 75 Mosquito AGAP007701-PA 117 65 Purple sea urchin LOC763581 85 70
Trypanosome (T. cruzi ) Tc00.1047053507027.59 97 47 Tc00.1047053506941.229 97 47 Trypanosome (T. brucei ) Tb927.6.3690 100 43 Nematode F59A2.4 101 68 Rice Os02g0217500 120 58
Thale cress CLPS5 118 46 CLPS3 123 60 Wine grape LOC100242380 118 60 Fission yeast SPAC22H10.05c 108 54 Budding yeast Clp 104 47 PCF11 Mouse PCF11 100 97 Chicken PCF11 97 77 Fly PCF11 126 59 Mosquito AGAP001271-PA 120 56 Purple sea urchin LOC582414 170 64 Nematode R144.2 53 52 Rice Os09g0566100 69 58 Thale cress PCFS4 52 54 Wine grape LOC100251089 70 55 Fission yeast SPAC4G9.04c 41 65 Budding yeast PCF11 40 56 WDR33 Mouse WDR33 100 96 Chicken WDR33 98 88 Fly CG1109 60 80 Mosquito AGAP001362-PA 271 74 Purple sea urchin LOC574793 86 82 Trypanosome (T. cruzi ) Tc00.1047053511491.140 33 53 Trypanosome (T. brucei ) Tb927.6.1830 33 52 Nematode R06A4.9 61 57 Rice Os04g0599800 155 47 Thale cress FY 198 65 Wine grape LOC100263567 237 70 Fission yeast PFS2 38 64 Budding yeast PFS2 35 58 RBBP6 Mouse RBBP6 100 93 Chicken RBBP6 101 82 Fly SNAMA 69 59 Mosquito AGAP011217-PA 69 60 Purple sea urchin LOC584197 36 63 Nematode TAG-214 63 51 Rice Os10g0431000 26 48 Thale cress AT5G47430 50 47 Wine grape LOC100252571 101 62 Fission yeast SPBP8B7.15c 27 51 Budding yeast MPE1 25 49 PPP1CA Mouse PPP1CA 100 100 Chicken PPP1CC 98 94 Fly PP1alpha-96A 99 92 Mosquito AGAP011166-PA 96 90 Purple sea urchin LOC586142 100 94 Trypanosome (T. cruzi ) Tc00.1047053508815.110 92 89 Trypanosome (T. brucei ) Tb11.01.0450 92 90 Nematode GSP-2 100 95 Rice OS03g0268000 95 89 Thale cress TOPP7 94 84 Wine grape LOC100256994 94 86 Fission yeast DIS2 99 94 Budding yeast GLC7 95 94 PPP1CB Mouse PPP1CB 100 100 Chicken PPP1CB 100 100 Fly PP1Alpha-96A 100 93 Mosquito AGAP003114-PA 97 93 Purple sea urchin LOC752338 99 97 Trypanosome (T. cruzi ) Tc00.1047053508815.110 91 88 Trypanosome (T. brucei ) Tb11.01.0450 91 89 Nematode GSP-1 100 97 Rice Os06g0164100 98 92 Thale cress TOPP4 98 90 Wine grape LOC100258649 104 89 Fission yeast DIS2 100 93 Budding yeast GLC7 94 91
