Characterization of the OmyY1 Region on the Rainbow Trout Y Chromosome

Table 1

List of predicted protein coding genes, pseudogenes, and unknown transcripts found in rainbow trout physical map contig #6256 sequence assemblies. Pseudogenes were differentiated from protein coding genes based on the presence of premature stop codons in open reading frames. The BAC clone column denotes the clone in the contig that gave a PCR product for the gene in question.

Gene name	Predicted gene function	PCR amplified in BAC clone	Annotation
Oncorhynchus mykiss sdY	Protein coding	143K08/223F06	Genbank AB626896.1
DENN domain-containing protein 4B-like (dennd4b-like)	Protein coding	RT015B10	Genbank KC686345
Immunoglobulin superfamily DCC subclass member 3-like (Igdcc3-like) [partial]	Protein coding	RT015B11	Genbank KC686344
cAMP-responsive element-binding protein 3-like protein 4 (cr3l4)	Protein coding	RT015B12	Genbank KC686342
F-box/WD repeat-containing protein 2 (FBXW2)	Protein coding	RT423A24	Genbank KC686346
Na/K/2Cl co-transporter (nkcc1a)	Protein coding	RT450D22	Genbank KC686348
Oocyte protease inhibitor-1 (opi-1)	Protein coding	RT004L12	Genbank KC686349
Zinc/iron-regulated protein (zip1)	Protein coding	RT004L12	Genbank KC686350
CREB-regulated transcription coactivator 2-like (TORC2-like)	Protein coding		Genbank KC686350
Zinc finger CCHC domain-containing protein 3-like	Protein coding		Genbank KC686343
General transcription factor II-I repeat domain-containing protein 2-like	Protein coding		Genbank KC686351
rRNA promoter binding protein	Protein coding		Genbank KC686343
Interleukin enhancer-binding factor 2 (ILF-2)	Pseudogene	RT015B10	Genbank KC686347
Unknown (Some homology to laminin subunit beta-1-like)	Unknown		cGRASP EST omyk-BX860091
Unknown	Unknown		cGRASP EST omyk-CB488087
Unknown (Some homology to Sec16A)	Unknown		cGRASP EST Contig22207
Unknown	Unknown		cGRASP EST omyk-DV199273
Unknown	Unknown		cGRASP EST Contig19333