| | D. virilis | D. melanogaster | Infected | Naïve | Infected | Naïve |
| Total no. of reads | 109,106 | 119,533 | 110,578 | 91,947 | Maximum length (bp) | 715 | 667 | 710 | 580 | Minimum length (bp) | 40 | 40 | 40 | 40 | Average length (bp) | 226 | 217 | 242 | 219 |
| No. of mtDNA-derived reads | 5,557 | 6,197 | 5,998 | 7,483 | No. of rDNA-derived reads | 25,991 | 22,500 | 38,910 | 35,990 | No. of other reads | 77,558 | 90,836 | 65,670 | 48,474 | No. of BLAST hits (No. of genes) | 55,358 (5,155) | 62,110 (4,709) | 63,555 (4,735) | 46,536 (4,275) | No. of unidentified reads | 22,200 | 28,726 | 2,115 | 1,938 |
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