Extensive Differences in Antifungal Immune Response in Two Drosophila Species Revealed by Comparative Transcriptome Analysis

Table 2

Number of reads, trimmed mean of M value (TMM), and induction coefficient (IC) for recognition, signaling, and effector class immune genes showing significant changes in expression level by fungal infection in D.  virilis.

D. virilis gene	D. melanogaster homologue	Infected		Naïve		IC	Functional class	Notes
		No. of reads	TMM	No. of reads	TMM
GJ20666	CG13422	6	0.153	0	0	Infinity	Recognition	Beta-glucan binding domain
GJ12160	PGRP-SB1	11	0.235	2	0.040	5.864	Recognition	PGRP domain
GJ18074	nimB3	2	0.067	12	0.376	0.178	Recognition	Nimrod-related
GJ12373	msn	9	0.024	1	0.002	9.595	Signaling	Kinase
GJ20603	Pvr	15	0.038	2	0.005	7.996	Signaling	Receptor
GJ19441	SPE	3	0.033	15	0.155	0.213	Signaling	Protease
GJ22479	Def	53	2.445	0	0	Infinity	Effector	Antimicrobial peptide
GJ21173	AttC	47	0.818	0	0	Infinity	Effector	Antimicrobial peptide
Cec2B	CecA1/CecA2	25	1.604	0	0	Infinity	Effector	Antimicrobial peptide
Cec3	CecC	23	1.475	0	0	Infinity	Effector	Antimicrobial peptide
GJ22469	Mtk	9	0.660	0	0	Infinity	Effector	Antimicrobial peptide
GJ19916	Dpt	104	3.812	4	0.138	27.720	Effector	Antimicrobial peptide
GJ19917	DptB	39	1.120	3	0.081	13.860	Effector	Antimicrobial peptide
GJ20572	AttA	49	0.856	24	0.393	2.177	Effector	Antimicrobial peptide
GJ17981	fon	217	1.641	370	2.624	0.625	Effector	Coagulation
GJ18607	IM4	79	7.542	151	13.521	0.558	Effector	IM
GJ21308	IM10	23	0.350	51	0.727	0.481	Effector	IM
GJ19885	IM1	37	3.302	123	10.296	0.321	Effector	IM

Genes are sorted in order of induction coefficient at each functional class.