Transcriptome of the Deep-Sea Black Scabbardfish, Aphanopus carbo (Perciformes: Trichiuridae): Tissue-Specific Expression Patterns and Candidate Genes Associated to Depth Adaptation

Table 5

Summary table of contig frequency for each of the tissues for those genes used to test the correlation with qPCR assays. S: spleen, B: brain, H: heart, G: gonad, L: liver and M: muscle. Names of genes based on their coding used in this table are found in table.

Gene	Contig code	Spleen	Brain	Gonads	Heart	Liver	Muscle
EF-1B	isotig00991	9	24	33	19	38	54
Rab-1A	isotig02689	4	0	3	3	0	4
BTF3	isotig02213	3	5	7	10	8	2
SOD-1	isotig02222	4	16	32	16	25	14
PRDX1	isotig01838	4	50	59	17	23	27
HSP90	isotig01406	3	64	94	86	86	13
Ferr	isotig01665	33	121	10	210	264	47
Hb-A	isotig06973	406	17	2	24	108	1
Hb-B	isotig00163	2,303	81	16	313	707	22
EPD-1	isotig01567	0	1,190	0	1	0	0
BLBP	isotig02632	0	171	0	0	0	0
TSPAN-8	isotig01397	17	7	3	407	24	9
TRPM-1	isotig01595	1	4	0	637	2	2
MYCBP	isotig01988	0	2	135	1	1	1
CTSS	isotig01659	0	0	135	0	0	0
STF-1	isotig00767	0	1	30	0	3,218	0
HPX	isotig01479	0	0	0	0	1,234	0
BHTM	isotig01489	1	0	0	0	1,024	0
FUCL1	isotig00473	1	0	0	0	22	0
ALDB	isotig01524	0	1	30	0	369	0
ISP LS12	isotig03004	0	0	0	0	211	1
ADH	isotig01491-546	1	2	16	7	292	6
GAPDH	isotig00609	0	8	51	539	134	1,281
LDH-A	isotig01401	2	7	2	5	0	789
PglyM	isotig01642	0	0	0	36	0	241
HSP70	isotig01398	0	0	0	0	2	142
FBPA	isotig00492	2	2	0	233	0	4,471
PGI	isotig01410	0	0	0	26	0	151