Research Article

Gene Expression Profiling of Grass Carp (Ctenopharyngodon idellus) and Crisp Grass Carp

Table 2

Differentially expressed genes involved in protein metabolism in the muscle of crisp grass carp and grass carp.

Gene nameAffy-IDFold change

Collagen
 Collagen, type I, alpha-2DrAffx.2.1.S1_s_at5.049230
 Collagen, type I, alpha-1Dr.1377.1.A1_at4.646780
 Collagen type II, alpha-1aDr.3761.1.S1_at4.283097
 si:ch211-106n13.3Dr.1276.1.A1_at1.825742
 Procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha
  polypeptide-2; hypothetical protein LOC100151456
Dr.19144.1.A1_at0.253430
 C1q and tumor necrosis factor related protein-5Dr.965.1.S1_at0.212245
Proteolysis
 Ubiquitin specific protease-16Dr.21873.1.A1_at4.844206
 Phosphate regulating gene with homologues to endopeptidases on the X chromosomeDr.25529.1.S1_at1.544958
 Ubiquitin-conjugating enzyme E2E 3 (UBC4/5 homolog, yeast)Dr.23793.1.A1_at0.581777
 zgc:123295Dr.18631.1.S1_at0.502692
 zgc:92791; hypothetical LOC797742Dr.15777.1.A1_at0.396054
 Carboxypeptidase-A5Dr.4882.1.S1_at0.333607
 Speckle-type POZ proteinDr.12893.1.S1_at0.202174
 Six-cysteine containing astacin protease 1Dr.21939.1.A1_at0.201674
 Janus kinase-1Dr.18349.1.A1_at0.188976
Protein transport
 zgc:92303Dr.4306.1.A1_at12.18947
 zgc:77724Dr.14413.1.A1_at4.213999
 KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 2, likeDr.1198.1.A1_at2.799246
 Clathrin, light chain (Lca)Dr.26380.1.A1_at1.98067
 Translocase of inner mitochondrial membrane 17 homolog A (yeast)Dr.3096.1.A1_at1.92503
 Importin-7Dr.19552.1.S1_at0.523015
 Adaptor-related protein complex 1, sigma 1 subunitDr.18735.1.A1_at0.409458
 Similar to peroxisome biogenesis factor 13; peroxisome biogenesis factor 13Dr.6902.1.S1_at0.321697
 Chromatin modifying protein 4BDr.16859.1.S1_at0.274372
Regulation of cellular protein metabolic process
 Eukaryotic translation initiation factor-5ADr.20010.3.S2_at3.296618
 Neuroguidin, EIF4E binding proteinDr.20137.1.S1_at2.291049
 Axin 1Dr.17733.1.S1_at0.505078
 MAP kinase-interacting serine/threonine kinase 2bDr.17570.1.S3_at0.449659
Glycoprotein
 Rhesus blood group, B glycoproteinDr.9532.1.S1_at8.115116
 Stromal cell-derived factor-4Dr.20092.1.S1_at4.935459
 AcetylcholinesteraseDr.15722.1.S1_at4.445239
 Melatonin receptor type 1B aDr.20978.1.S1_at3.767983
 Semaphorin 3abDr.8112.1.S1_at3.37293
 Myelocytomatosis oncogene bDr.16048.1.S1_at3.10492
 zgc:123242Dr.13408.1.S1_at2.546485
 Ephrin-A2Dr.20957.2.A1_at1.785163
 Fibroblast growth factor receptor-4Dr.409.1.S1_at1.746774
 Opsin 1 (cone pigments), long-wave-sensitive, 1Dr.131175-1_s_at0.379971
 Transmembrane protein-192Dr.17388.2.S1_at0.214102

Fold change = (signal intensity of a gene in the muscle of crisp grass carp)/(signal intensity of the gene in the muscle of grass carp).