Research Article

Gene Expression Profiling of Grass Carp (Ctenopharyngodon idellus) and Crisp Grass Carp

Table 3

Differentially expressed genes involved in muscle development and growth in the muscle of crisp grass carp and grass carp.

Gene nameAffy-IDFold change

Developmental growth
 Chemokine (C-X-C motif) ligand 12a (stromal cell-derived factor-1)Dr.822.1.S3_at3.862025
 Myostatin (MSTN)Dr.5778.1.S1_at3.411231
 Axin 1Dr.17733.1.S1_at0.505078
 Survival of motor neuron protein interacting protein-1Dr.2724.1.S1_at0.480291
Muscle cell differentiation
 AcetylcholinesteraseDr.15722.1.S1_at4.445239
 Chemokine (C-X-C motif) ligand 12a (stromal cell-derived factor 1)Dr.822.1.S3_at3.862025
 Glycogen synthase kinase 3-alphaDr.259.1.S1_at0.663178
 Pre-B-cell leukemia transcription factor-1a; zgc:1588-24; pre-B-cell leukemia transcription
  factor-4; hypothetical LOC100004634; hypothetical protein LOC100150879
Dr.4926.1.S1_at0.175405
Cytoskeleton organization
 AcetylcholinesteraseDr.15722.1.S1_at4.445239
 Chemokine (C-X-C motif) ligand 12a (stromal cell-derived factor 1)Dr.822.1.S3_at3.862025
 zgc:158673Dr.4838.1.A1_at2.108265
 Capping protein (actin filament) muscle Z-line, betaDr.25474.1.S1_at1.611818
 Tubulin, beta-2cDr.5605.3.S1_x_at0.566588
 Actin related protein 2/3 complex, subunit 4, like; actin related protein 2/3 complex, subunit 4Dr.5314.1.S1_at0.459813
 Septin-8aDr.4204.1.A1_at0.388101
 Similar to RP11-100C15.2Dr.21663.1.A1_at0.284452
 Lamin-B1Dr.25051.1.S2_at0.249782
 ADP-ribosylation factor-like 8-BaDr.7615.1.A1_at0.249671
 zgc:136930Dr.24487.1.A1_at0.233076
 Hypothetical protein LOC553488Dr.26067.1.A1_s_at0.221494
 Janus kinase-1Dr.18349.1.A1_at0.188970
 Nexilin (F actin binding protein)Dr.4859.1.A1_at0.139300
Skeletal system development
 Activin A receptor, type I likeDr.606.1.S2_at11.01876
 Eukaryotic translation initiation factor-3, subunit E, a/bDr.5119.1.A1_at4.241705
 Cytochrome P-450, family-26, subfamily b, polypeptide 1Dr.180.1.A1_at3.092533
 Runt-related transcription factor-3Dr.10668.1.S2_at0.174100
Tight junction
 zgc:110333; zgc:173444Dr.10400.1.A1_at3.965793
 Tight junction protein-3Dr.21038.1.S1_at3.436695
 Occludin-alphaDr.7692.1.A1_at2.112512

Fold change = (signal intensity of a gene in the muscle of crisp grass carp)/(signal intensity of the gene in the muscle of grass carp).