Challenges of the Unknown: Clinical Application of Microbial Metagenomics

Table 2

Genome capture of Lactobacillus, the most dominant genus identified within the nonhuman model dataset. Reads were mapped against a reference genome of the most abundant strain within the respective species identified.

Species identified (strain name)	Mapped reads	Bases (Mb)	Depth of coverage (bp)	Genome coverage (%)
Lactobacillus reuteri (5007)	983,484	457.1	234.7	98.6
Lactobacillus johnsonii (DPC_6026)	51,947	24.2	12.3	87.8
Lactobacillus amylovorus (GRL_1112)	66,840	31.7	15.3	68.9
Lactobacillus acidophilus (30SC )	58,678	27.3	13.2	55.4