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International Journal of Genomics
Volume 2015, Article ID 603182, 10 pages
Research Article

A Classification of Basic Helix-Loop-Helix Transcription Factors of Soybean

1USDA-ARS Crop Production and Pest Control Research Unit, 915 West State Street, West Lafayette, IN 47907, USA
2Department of Crop Sciences, University of Illinois, 1101 W. Peabody Drive, Urbana, IL 61801, USA

Received 18 November 2014; Accepted 29 December 2014

Academic Editor: Martine A. Collart

Copyright © 2015 Karen A. Hudson and Matthew E. Hudson. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

Supplementary Material

As Supplementary Material we have included the following. Addititional File 1: an Excel spreadsheet file that includes names and expression data for all of the soybean bHLH-encoding gene models.

Additional File 2: A list of soybean gene models excluded from the analysis due to an incomplete bHLH domain or predicted in-frame stop codon.

Additional File 3: A full-text alignment of all 319 soybean bHLH domains in pdf format.

Additional File 4: a detailed phylogenetic tree of the soybean bHLH genes including full names and predicted family membership.

Additional File 5: An Excel spreadsheet showing the presumptive rice and Arabidopsis orthologs of the soybean bHLH genes.

Additional File 6: An Excel spreadsheet containing a list of bHLHs enriched for expression in seed or nodules.

Additional File 7: The alignment of 319 soybean bHLH genes in PHYLIP format for computer analysis.

Additional File 8: A LOGO illustration of the putative Motif 40.

  1. Supplementary Material