Significant Microsynteny with New Evolutionary Highlights Is Detected through Comparative Genomic Sequence Analysis of Maize CCCH IX Gene Subfamily

Table 1

The 27 CCCH IX genes identified in three species and their sequence characteristics (gene ID, ORF, MW, PI, and chromosome locations).

Gene name	Gene identifier	ORF (aa)	MW (Da)	pI	Chromosome	Chromosomal localization
						Star	End
OsC3H2	LOC_Os01g09620.1	386	41422.51	6.41	Os1	4949047	4951126
OsC3H10	LOC_Os01g53650.1	225	24982.17	6.06	Os1	30824689	30825670
OsC3H24	LOC_Os03g49170.1	764	81043.54	6.63	Os3	28008600	28012204
OsC3H33	LOC_Os05g03760.1	601	63235.89	8.65	Os5	1662021	1664438
OsC3H35	LOC_Os05g10670.1	464	49684.7	9.02	Os5	5846045	5848291
OsC3H37	LOC_Os05g45020.1	255	28257.88	5.39	Os5	26171092	26172349
OsC3H50	LOC_Os07g38090.1	657	69391.93	6.61	Os7	22840986	22843954
OsC3H52	LOC_Os07g47240.1	280	31590.77	8.04	Os7	28233256	28234642
OsC3H67	LOC_Os12g33090.1	619	64725.96	6.04	Os12	20018555	20021302
ZmC3H4	GRMZM2G180979_P01	746	79771.77	6.4	Zm1	263731420	263734946
ZmC3H10	GRMZM2G099622_P03	360	37921.57	6.37	Zm2	205904041	205906953
ZmC3H12	GRMZM5G853245_P03	370	39786.59	6.46	Zm3	6681798	6683631
ZmC3H28	GRMZM5G845366_P01	482	52092.46	7.97	Zm5	12382780	12384893
ZmC3H34	AC233871.1_FGP008	416	45437.96	8.78	Zm6	1823029	1825102
ZmC3H38	GRMZM5G801627_P01	394	42104.18	8.02	Zm6	132663265	132665063
ZmC3H39	GRMZM2G004795_P01	270	29691.44	5.67	Zm6	160013893	160016282
ZmC3H43	GRMZM5G842019_P01	656	69821.35	6.88	Zm7	158677416	158680576
ZmC3H51	GRMZM2G173124_P03	378	40178.89	6.46	Zm8	20669510	20671733
ZmC3H53	GRMZM2G093404_P01	262	28025.75	6.4	Zm8	124841672	124843159
ZmC3H54	GRMZM2G117007_P01	372	40034.27	8.65	Zm8	131041707	131043172
ZmC3H63	GRMZM2G027298_P01	594	62657.48	5.71	Zm10	27949011	27951381
SbC3H2	SB01G011150	745	79472.39	6.51	Sb1	10009063	10012269
SbC3H10	SB02G036710	680	72441.2	6.88	Sb2	71102658	71104964
SbC3H12	SB03G003110	350	37662.05	8.2	Sb3	3207828	3209693
SbC3H44	SB08G016640	533	56473.43	5.89	Sb8	44663680	44665480
SbC3H45	SB09G002390	611	64185.57	8.21	Sb9	2607622	2610024
SbC3H47	SB09G006050	399	42664.56	6.21	Sb9	8731871	8733975

Open reading frame (ORF), molecular weight (MW), and isoelectric point (IP).