Reduced Representation Libraries from DNA Pools Analysed with Next Generation Semiconductor Based-Sequencing to Identify SNPs in Extreme and Divergent Pigs for Back Fat Thickness

Table 3

Summary of regression analysis between allele frequency estimated by Ion Torrent sequencing and the allele frequency obtained by genotyping with the Illumina PorcineSNP60 BeadChip.

RD	Polymorphic sites		Polymorphic and monomorphic sites
		Positions		Positions
3	0.1199	258	0.6882	317 (258 + 59)
4	0.1601	99	0.6399	119 (99 + 20)
5	0.1611	36	0.5868	41 (36 + 5)
6	0.3866	11	0.7006	13 (11 + 2)

RD = read depth; = regression coefficient; positions: number of genomic sites analyzed.