Reduced Representation Libraries from DNA Pools Analysed with Next Generation Semiconductor Based-Sequencing to Identify SNPs in Extreme and Divergent Pigs for Back Fat Thickness

Table 4

Overlapping results between the SNPs associated with back fat thickness as identified with the Ion Torrent sequencing data () and those obtained in the genome wide association study (GWAS) reported by Fontanesi et al. [10] (, window = ±0.5 Mbp for each marker).

Chr.	Marker	PosM	PGWAS
1	ALGA0000009	52,297		68,514
1	ALGA0000014	79,763		68,514
6	M1GA0008302	787,265		873,061
6	M1GA0008318	945,991		873,061
6	M1GA0008329	996,248		873,061
9	DRGA0009307	17,138,159		16,885,924
12	DIAS0000309	48,865,200		48,937,212

Only the top for each marker is listed. All other data are presented in Table S5.
Chr. = chromosome; marker = marker in the Illumina PorcineSNP60 BeadChip; Pos_M = nucleotide position of the marker on the Sscrofa10.2 reference genome; = value of association in the GWAS; = nucleotide position on the Sscrofa10.2 reference genome of the SNP having ; = value of Fisher’s test.