International Journal of Genomics / 2016 / Article / Tab 2

Research Article

Performance Characterization and Validation of Saliva as an Alternative Specimen Source for Detecting Hereditary Breast Cancer Mutations by Next Generation Sequencing

Table 2

Quality score, mean depth coverage, and uniformity of the data generated from DNA samples extracted from saliva and their matched blood samples.

Sample IDPercentage of data Q20Mean depth of coverageUniformity

1601074001Saliva91.32%246.892.96%
1601074001Blood91.35%246.398.59%
1601074002Saliva91.05%785.897.60%
1601074002Blood91.32%442.197.41%
1601074003Saliva92.99%218.296.71%
1601074003Blood92.78%82.298.20%
1601074004Saliva92.68%375.297.07%
1601074004Blood93.00%76.894.39%
1601074005Saliva92.93%139.993.02%
1601074005Blood92.62%212.296.63%
1601074006Saliva92.83%84.590.96%
1601074006Blood92.61%123.898.33%
Mean blood92.28%197.297.26%
Mean saliva92.30%308.494.72%

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