Transcriptome Analysis of Bovine Ovarian Follicles at Predeviation and Onset of Deviation Stages of a Follicular Wave
Table 2
List of downregulated genes in ODF1 versus PDF1 and their functions.
Gene symbol
GenBank number
PDF1 RPKM
ODF1 RPKM
Fold change
FDR corrected value
Gene product functions
ACTR1A
NM_001193248.1
17.31
0.43
−39.45
2.63 × 10−2
Vesicle motility
LOC787803
XM_002700116.1
45.66
2.15
−20.79
3.41 × 10−7
Unknown
PPP1R14A
XM_002694966.1
68.29
3.99
−16.76
7.75 × 10−11
Protein phosphatase inhibitor
OLA1
NM_001046045.1
22.71
1.74
−12.79
1.10 × 10−2
Hydrolase activity and GTP binding
QRFPR
NM_001192681.1
19.15
1.55
−12.07
4.40 × 10−2
Modulate adenylate cyclase
RMRP
NR_036646.1
149.79
13.57
−10.82
Lncrna class
RN5-8S1
NR_036643.1
9330.16
856.09
−10.68
Unknown
LOC100335749
XR_083021.1
35.26
4.58
−7.54
8.45 × 10−4
Senescence-associated protein-like
C11H2orf40
NM_001038113.1
41.02
5.84
−6.88
2.22 × 10−4
Esophageal cancer
BOLA
NM_001040532.1
74.93
11.19
−6.56
1.01 × 10−8
Transcription
ANGPT2
NM_001098855.1
39.04
7.91
−4.83
3.56 × 10−3
Angiogenic signal
VNN1
NM_001024556.2
33.51
7.26
−4.52
1.94 × 10−2
Amidohydrolase
KRT2
XM_001254015.1
40.64
9.41
−4.23
6.20 × 10−3
Keratinocyte activation
IHH
NM_001076870.2
42.84
9.98
−4.21
3.93 × 10−3
Smoothened
RN18S1
NR_036642.1
4431.16
1040.31
−4.17
Unknown
BOLA
NM_001038518.1
101.2
26.48
−3.74
6.16 × 10−8
Transcription
LOC100335409
XM_002705970.1
1012.71
275.19
−3.61
Unknown
LOC100140002
XR_084188.1
38.53
10.81
−3.49
3.63 × 10−2
Envelope glycoprotein-like
ADM
NM_173888.3
203.61
61
−3.27
Adrenomedullin
4-Sep
NM_001034651.1
69.77
22.91
−2.98
9.40 × 10−4
Cytokinesis, platelet secretion
ITPR1
NM_174841.2
61.79
22.18
−2.73
9.78 × 10−3
Intracellular channel
RN28S1
NR_036644.1
537.61
205.32
−2.56
Unknown
LOC100336997
XM_002685421.1
5741.94
2262.25
−2.49
Unknown
PRSS35
NM_001035457.3
134.05
55.07
−2.38
1.21 × 10−5
Ovulation, CL formation and regression
LOC100337434
XR_083937.1
7026.76
3115.13
−2.21
Unknown
LOC100140226
XM_001787664.2
1183.02
532.17
−2.18
Zinc finger protein 347-like
LOC100337402
XR_083935.1
908.3
413.36
−2.15
Unknown
LOC511901
XM_589328.5
102.29
49.83
−2.01
1.42 × 10−2
H1 histone
LOC100137883
XM_002706880.1
98.48
49.64
−1.94
3.47 × 10−2
Thymosin beta-4-like
CDH2
NM_001166492.1
103.68
53.3
−1.91
3.44 × 10−2
Neuronal recognition
APOA1
NM_174242.3
126.56
66.22
−1.87
1.07 × 10−2
Activates spermatozoa motility
PAPSS2
NM_001076075.1
119.75
65.23
−1.8
3.68 × 10−2
Skeletogenesis
LOC100299201
XR_084007.1
327.62
178.8
−1.79
1.28 × 10−7
Ribosomal protein
GSTA5
NM_001099016.1
138.14
80.02
−1.69
4.93 × 10−2
Glutathione transferase
AKR1B1
NM_001012519.1
182.74
108.97
−1.64
1.33 × 10−2
Electron carrier activity
SLCO1A2
NM_174654.2
192.47
119.34
−1.58
2.65 × 10−2
Mediates transport
HERC1
NM_001103282.1
222.29
138.46
−1.57
1.01 × 10−2
Membrane trafficking
CWC25
NM_001105359.1
433.81
274.72
−1.55
7.12 × 10−6
Alternatively spliced transcripts
ACOT11
NM_001103275.1
693.81
440.12
−1.54
6.15 × 10−10
Acyl-Coa thioesterase activity
LOC615589
NM_001098467.1
245.33
157.07
−1.53
1.10 × 10−2
Keratin-like protein
C12H13orf18
NM_001102041.1
269.27
173.55
−1.52
6.34 × 10−3
Unknown
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