International Journal of Genomics / 2016 / Article / Tab 2

Research Article

Transcriptome Analysis of Bovine Ovarian Follicles at Predeviation and Onset of Deviation Stages of a Follicular Wave

Table 2

List of downregulated genes in ODF1 versus PDF1 and their functions.

Gene symbolGenBank numberPDF1 RPKMODF1 RPKMFold changeFDR corrected valueGene product functions

ACTR1ANM_001193248.117.310.43−39.452.63 × 10−2Vesicle motility
LOC787803XM_002700116.145.662.15−20.793.41 × 10−7Unknown
PPP1R14AXM_002694966.168.293.99−16.767.75 × 10−11Protein phosphatase inhibitor
OLA1NM_001046045.122.711.74−12.791.10 × 10−2Hydrolase activity and GTP binding
QRFPRNM_001192681.119.151.55−12.074.40 × 10−2Modulate adenylate cyclase
RMRPNR_036646.1149.7913.57−10.82Lncrna class
RN5-8S1NR_036643.19330.16856.09−10.68Unknown
LOC100335749XR_083021.135.264.58−7.548.45 × 10−4Senescence-associated protein-like
C11H2orf40NM_001038113.141.025.84−6.882.22 × 10−4Esophageal cancer
BOLANM_001040532.174.9311.19−6.561.01 × 10−8Transcription
ANGPT2NM_001098855.139.047.91−4.833.56 × 10−3Angiogenic signal
VNN1NM_001024556.233.517.26−4.521.94 × 10−2Amidohydrolase
KRT2XM_001254015.140.649.41−4.236.20 × 10−3Keratinocyte activation
IHHNM_001076870.242.849.98−4.213.93 × 10−3Smoothened
RN18S1NR_036642.14431.161040.31−4.17Unknown
BOLANM_001038518.1101.226.48−3.746.16 × 10−8Transcription
LOC100335409XM_002705970.11012.71275.19−3.61Unknown
LOC100140002XR_084188.138.5310.81−3.493.63 × 10−2Envelope glycoprotein-like
ADMNM_173888.3203.6161−3.27Adrenomedullin
4-SepNM_001034651.169.7722.91−2.989.40 × 10−4Cytokinesis, platelet secretion
ITPR1NM_174841.261.7922.18−2.739.78 × 10−3Intracellular channel
RN28S1NR_036644.1537.61205.32−2.56Unknown
LOC100336997XM_002685421.15741.942262.25−2.49Unknown
PRSS35NM_001035457.3134.0555.07−2.381.21 × 10−5Ovulation, CL formation and regression
LOC100337434XR_083937.17026.763115.13−2.21Unknown
LOC100140226XM_001787664.21183.02532.17−2.18Zinc finger protein 347-like
LOC100337402XR_083935.1908.3413.36−2.15Unknown
LOC511901XM_589328.5102.2949.83−2.011.42 × 10−2H1 histone
LOC100137883XM_002706880.198.4849.64−1.943.47 × 10−2Thymosin beta-4-like
CDH2NM_001166492.1103.6853.3−1.913.44 × 10−2Neuronal recognition
APOA1NM_174242.3126.5666.22−1.871.07 × 10−2Activates spermatozoa motility
PAPSS2NM_001076075.1119.7565.23−1.83.68 × 10−2Skeletogenesis
LOC100299201XR_084007.1327.62178.8−1.791.28 × 10−7Ribosomal protein
GSTA5NM_001099016.1138.1480.02−1.694.93 × 10−2Glutathione transferase
AKR1B1NM_001012519.1182.74108.97−1.641.33 × 10−2Electron carrier activity
SLCO1A2NM_174654.2192.47119.34−1.582.65 × 10−2Mediates transport
HERC1NM_001103282.1222.29138.46−1.571.01 × 10−2Membrane trafficking
CWC25NM_001105359.1433.81274.72−1.557.12 × 10−6Alternatively spliced transcripts
ACOT11NM_001103275.1693.81440.12−1.546.15 × 10−10Acyl-Coa thioesterase activity
LOC615589NM_001098467.1245.33157.07−1.531.10 × 10−2Keratin-like protein
C12H13orf18NM_001102041.1269.27173.55−1.526.34 × 10−3Unknown

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