Research Article
Transcriptome Analysis of Bovine Ovarian Follicles at Predeviation and Onset of Deviation Stages of a Follicular Wave
Table 2
List of downregulated genes in ODF1 versus PDF1 and their functions.
| | Gene symbol | GenBank number | PDF1 RPKM | ODF1 RPKM | Fold change | FDR corrected value | Gene product functions |
| | ACTR1A | NM_001193248.1 | 17.31 | 0.43 | −39.45 | 2.63 × 10−2 | Vesicle motility | | LOC787803 | XM_002700116.1 | 45.66 | 2.15 | −20.79 | 3.41 × 10−7 | Unknown | | PPP1R14A | XM_002694966.1 | 68.29 | 3.99 | −16.76 | 7.75 × 10−11 | Protein phosphatase inhibitor | | OLA1 | NM_001046045.1 | 22.71 | 1.74 | −12.79 | 1.10 × 10−2 | Hydrolase activity and GTP binding | | QRFPR | NM_001192681.1 | 19.15 | 1.55 | −12.07 | 4.40 × 10−2 | Modulate adenylate cyclase | | RMRP | NR_036646.1 | 149.79 | 13.57 | −10.82 | | Lncrna class | | RN5-8S1 | NR_036643.1 | 9330.16 | 856.09 | −10.68 | | Unknown | | LOC100335749 | XR_083021.1 | 35.26 | 4.58 | −7.54 | 8.45 × 10−4 | Senescence-associated protein-like | | C11H2orf40 | NM_001038113.1 | 41.02 | 5.84 | −6.88 | 2.22 × 10−4 | Esophageal cancer | | BOLA | NM_001040532.1 | 74.93 | 11.19 | −6.56 | 1.01 × 10−8 | Transcription | | ANGPT2 | NM_001098855.1 | 39.04 | 7.91 | −4.83 | 3.56 × 10−3 | Angiogenic signal | | VNN1 | NM_001024556.2 | 33.51 | 7.26 | −4.52 | 1.94 × 10−2 | Amidohydrolase | | KRT2 | XM_001254015.1 | 40.64 | 9.41 | −4.23 | 6.20 × 10−3 | Keratinocyte activation | | IHH | NM_001076870.2 | 42.84 | 9.98 | −4.21 | 3.93 × 10−3 | Smoothened | | RN18S1 | NR_036642.1 | 4431.16 | 1040.31 | −4.17 | | Unknown | | BOLA | NM_001038518.1 | 101.2 | 26.48 | −3.74 | 6.16 × 10−8 | Transcription | | LOC100335409 | XM_002705970.1 | 1012.71 | 275.19 | −3.61 | | Unknown | | LOC100140002 | XR_084188.1 | 38.53 | 10.81 | −3.49 | 3.63 × 10−2 | Envelope glycoprotein-like | | ADM | NM_173888.3 | 203.61 | 61 | −3.27 | | Adrenomedullin | | 4-Sep | NM_001034651.1 | 69.77 | 22.91 | −2.98 | 9.40 × 10−4 | Cytokinesis, platelet secretion | | ITPR1 | NM_174841.2 | 61.79 | 22.18 | −2.73 | 9.78 × 10−3 | Intracellular channel | | RN28S1 | NR_036644.1 | 537.61 | 205.32 | −2.56 | | Unknown | | LOC100336997 | XM_002685421.1 | 5741.94 | 2262.25 | −2.49 | | Unknown | | PRSS35 | NM_001035457.3 | 134.05 | 55.07 | −2.38 | 1.21 × 10−5 | Ovulation, CL formation and regression | | LOC100337434 | XR_083937.1 | 7026.76 | 3115.13 | −2.21 | | Unknown | | LOC100140226 | XM_001787664.2 | 1183.02 | 532.17 | −2.18 | | Zinc finger protein 347-like | | LOC100337402 | XR_083935.1 | 908.3 | 413.36 | −2.15 | | Unknown | | LOC511901 | XM_589328.5 | 102.29 | 49.83 | −2.01 | 1.42 × 10−2 | H1 histone | | LOC100137883 | XM_002706880.1 | 98.48 | 49.64 | −1.94 | 3.47 × 10−2 | Thymosin beta-4-like | | CDH2 | NM_001166492.1 | 103.68 | 53.3 | −1.91 | 3.44 × 10−2 | Neuronal recognition | | APOA1 | NM_174242.3 | 126.56 | 66.22 | −1.87 | 1.07 × 10−2 | Activates spermatozoa motility | | PAPSS2 | NM_001076075.1 | 119.75 | 65.23 | −1.8 | 3.68 × 10−2 | Skeletogenesis | | LOC100299201 | XR_084007.1 | 327.62 | 178.8 | −1.79 | 1.28 × 10−7 | Ribosomal protein | | GSTA5 | NM_001099016.1 | 138.14 | 80.02 | −1.69 | 4.93 × 10−2 | Glutathione transferase | | AKR1B1 | NM_001012519.1 | 182.74 | 108.97 | −1.64 | 1.33 × 10−2 | Electron carrier activity | | SLCO1A2 | NM_174654.2 | 192.47 | 119.34 | −1.58 | 2.65 × 10−2 | Mediates transport | | HERC1 | NM_001103282.1 | 222.29 | 138.46 | −1.57 | 1.01 × 10−2 | Membrane trafficking | | CWC25 | NM_001105359.1 | 433.81 | 274.72 | −1.55 | 7.12 × 10−6 | Alternatively spliced transcripts | | ACOT11 | NM_001103275.1 | 693.81 | 440.12 | −1.54 | 6.15 × 10−10 | Acyl-Coa thioesterase activity | | LOC615589 | NM_001098467.1 | 245.33 | 157.07 | −1.53 | 1.10 × 10−2 | Keratin-like protein | | C12H13orf18 | NM_001102041.1 | 269.27 | 173.55 | −1.52 | 6.34 × 10−3 | Unknown |
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