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| Database | PmCQ2 | PmCQ6 | Pm36950 | PmHN06 | Pm3480 | Pm70 | Annotation |
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| Phages-associated genes | PmCQ2_1g0197 | | Pmu_00900 | PMCN06_0843 | | | IS200 transposase |
| PmCQ2_1g0267 | | Pmu_13570 | | | | IS200 transposase |
| PmCQ2_1g0316 | | Pmu_13960 | | | | IS200 transposase |
| PmCQ2_1g0378 | | Pmu_16290 | | | | IS200 transposase |
| PmCQ2_2g0113 | | Pmu_17660 | | | | IS200 transposase |
| PmCQ2_4g0323 | | Pmu_18340 | | | | IS200 transposase |
| PmCQ2_4g0359 | | | | | | IS200 transposase |
| PmCQ2_2g0080 | | Pmu_00570 | PMCN06_0130 | NT08PM_0122 | PM1098 | Glycyl-tRNA synthetase subunit alpha |
| PmCQ2_2g0148 | | Pmu_01310 | PMCN06_0200 | NT08PM_0197 | PM1029 | Peptidase B |
| PmCQ2_2g0349 | | Pmu_04490 | PMCN06_0404 | NT08PM_0930 | PM0385 | Electron transport complex protein RnfC |
| PmCQ2_2g0231 | | Pmu_15590 | | NT08PM_1618 | PM1778 | Hypothetical protein |
| PmCQ2_6g0020 | | | | | | Hypothetical protein |
| PmCQ2_2g0066 | | | | | | Transposase IS605 |
| PmCQ2_2g0097 | | | | | | Transposase IS605 |
| PmCQ2_6g0026 | | | | | | Transposase IS605 |
| PmCQ2_2g0228 | | | | NT08PM_0285 | | Hypothetical protein |
| PmCQ2_2g0229 | | | | NT08PM_0286 | | Hypothetical protein |
| PmCQ2_2g0230 | | | | NT08PM_0288 | | Hypothetical protein |
| PmCQ2_2g0233 | | | | NT08PM_0294 | | Phage major capsid protein |
| PmCQ2_2g0234 | | | | NT08PM_0295 | | Hypothetical protein |
| PmCQ2_2g0235 | | | | NT08PM_0298 | | Prophage integrase, putative |
| PmCQ2_2g0067 | | | | | | Transposase IS200 |
| PmCQ2_2g0096 | | | | | | Transposase IS200 |
| PmCQ2_2g0232 | | | | | | Hypothetical protein |
| PmCQ2_2g0088 | | | | | | ModB, partial |
| | PmCQ6_9g0009 | | PMCN06_2102 | | | Hypothetical protein PMCN06_2102 |
| | PmCQ6_9g0008 | | PMCN06_2103 | | | Hypothetical protein PMCN06_2103 |
| | PmCQ6_9g0006 | | PMCN06_2105 | | | Hypothetical protein PMCN06_2105 |
| | PmCQ6_9g0003 | | | | | Tail assembly protein I |
| | PmCQ6_9g0001 | | | | | Host specificity protein, putative, partial |
| | PmCQ6_9g0005 | | | | | Tail protein |
| | PmCQ6_9g0004 | | | | | Tail assembly protein |
| Genomic islands | PmCQ2_1g0197 | | Pmu_00900 | PMCN06_0843 | | | IS200 transposase |
| PmCQ2_1g0267 | | Pmu_13570 | | | | IS200 transposase |
| PmCQ2_1g0316 | | Pmu_13960 | | | | IS200 transposase |
| PmCQ2_1g0378 | | Pmu_16290 | | | | IS200 transposase |
| PmCQ2_2g0113 | | Pmu_17660 | | | | IS200 transposase |
| PmCQ2_4g0323 | | Pmu_18340 | | | | IS200 transposase |
| PmCQ2_4g0359 | | | | | | IS200 transposase |
| PmCQ2_2g0231 | | Pmu_15590 | | NT08PM_1618 | PM1778 | Hypothetical protein |
| PmCQ2_6g0025 | | | PMCN06_0111 | NT08PM_0103 | | Hypothetical protein PMCN06_0111 |
| | | | PMCN06_1438 | | | |
| | | | PMCN06_2110 | | | |
| PmCQ2_5g0021 | | | PMCN06_0084 | NT08PM_0084 | | Hypothetical protein PMCN06_0084 |
| | | | PMCN06_2086 | | | |
| PmCQ2_5g0019 | | | PMCN06_0086 | NT08PM_0086 | | Phage terminase, large subunit, pbsx family, putative |
| | | | PMCN06_2088 | | | |
| PmCQ2_2g0228 | | | | NT08PM_0285 | | Hypothetical protein |
| PmCQ2_2g0229 | | | | NT08PM_0286 | | Hypothetical protein |
| PmCQ2_2g0230 | | | | NT08PM_0288 | | Hypothetical protein |
| PmCQ2_2g0233 | | | | NT08PM_0294 | | Phage major capsid protein |
| PmCQ2_2g0234 | | | | NT08PM_0295 | | Hypothetical protein |
| PmCQ2_2g0235 | | | | NT08PM_0298 | | Prophage integrase, putative |
| PmCQ2_7g0006 | | | PMCN06_0066 | | | Transcriptional regulator |
| PmCQ2_5g0013 | | | PMCN06_0092 | | | Hypothetical protein PMCN06_0092 |
| PmCQ2_5g0025 | | | PMCN06_2080 | | | Hypothetical protein |
| | PmCQ6_17g0009 | | PMCN06_0073 | NT08PM_0074 | | Site-specific DNA-methyltransferase (adenine-specific) |
| | | | PMCN06_2074 | | | |
| | PmCQ6_17g0011 | | PMCN06_0074 | NT08PM_0075 | | Putative bacteriophage protein |
| | | | PMCN06_2076 | | | |
| | PmCQ6_5g0001 | | PMCN06_0082 | NT08PM_0082 | | Lysozyme |
| | | | PMCN06_2084 | | | |
| | PmCQ6_17g0004 | | PMCN06_1403 | | | Hypothetical protein |
| | | | PMCN06_2067 | | | |
| | PmCQ6_C4143g0001 | | PMCN06_1416 | | | Glycoside hydrolase |
| | PmCQ6_17g0007 | | PMCN06_2072 | | | Hypothetical protein PMCN06_2072 |
| | PmCQ6_17g0008 | | PMCN06_2073 | | | Putative replicative DNA helicase |
| | PmCQ6_17g0010 | | PMCN06_2075 | | | Hypothetical protein PMCN06_2075 |
| | PmCQ6_9g0009 | | PMCN06_2102 | | | Hypothetical protein PMCN06_2102 |
| | PmCQ6_9g0008 | | PMCN06_2103 | | | Hypothetical protein PMCN06_2103 |
| | PmCQ6_9g0006 | | PMCN06_2105 | | | Hypothetical protein PMCN06_2105 |
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| ISs | PmCQ2_1g0197 | | Pmu_00900 | PMCN06_0843 | | | IS200 transposase |
| PmCQ2_1g0267 | | Pmu_13570 | PMCN06_0843 | | | IS200 transposase |
| PmCQ2_1g0316 | | Pmu_13960 | PMCN06_0843 | | | IS200 transposase |
| PmCQ2_1g0378 | | Pmu_16290 | PMCN06_0843 | | | IS200 transposase |
| PmCQ2_2g0113 | | Pmu_17660 | PMCN06_0843 | | | IS200 transposase |
| PmCQ2_4g0323 | | Pmu_18340 | PMCN06_0843 | | | IS200 transposase |
| PmCQ2_4g0359 | | | PMCN06_0843 | | | IS200 transposase |
| | PmCQ6_12g0001 | | | | | Putative transposase for insertion sequence IS1162 |
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| VFDB | PmCQ2_4g0316 | | Pmu_13500 | PMCN06_1329 | NT08PM_1414 | PM1994 | UDP-3-O-[3-hydroxymyristoyl]; UDP-3-O-acylglucosamine N-acyltransferase |
| PmCQ2_1g0631 | | Pmu_21120 | PMCN06_2192 | NT08PM_2001 | PM1666 | Noncanonical purine NTP pyrophosphatase, RdgB/HAM1 family |
| PmCQ2_4g0241 | | Pmu_12710 | PMCN06_1257 | NT08PM_1342 | PM0051 | Iron-binding protein FbpA |
| PmCQ2_3g0252 | | Pmu_08050 | PMCN06_0796 | NT08PM_0537 | PM0734 | Periplasmic serine protease do/hhoA-like protein |
| PmCQ2_2g0162 | | Pmu_01460 | PMCN06_0215 | NT08PM_0212 | PM1015 | Hypothetical protein PM1015 |
| PmCQ2_1g0106 | | Pmu_15140 | PMCN06_1551 | NT08PM_1574 | PM1820 | Putative virulence effector, SrfC |
| PmCQ2_1g0553 | | Pmu_15880 | PMCN06_1607 | NT08PM_1650 | PM1357 | Elongation factor Tu, partial |
| PmCQ2_1g0157 | | Pmu_20230 | PMCN06_2025 | NT08PM_2100 | PM1746 | |
| PmCQ2_3g0367 | | | | | | Nonspecific tight adherence protein D, partial |
| | PmCQ6_2g0065 | Pmu_09310 | | NT08PM_0414 | PM0846 | Nonspecific tight adherence protein D |
| | PmCQ6_6g0048 | | | | | Nucleoside-diphosphate sugar epimerase/dehydratase |
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| Secreted proteins | PmCQ2_1g0033 | | Pmu_14370 | PMCN06_1474 | NT08PM_1498 | PM1897 | Hypothetical protein, uncharacterized lipoprotein PM1897 |
| PmCQ2_3g0252 | | Pmu_08050 | PMCN06_0796 | NT08PM_0537 | PM0734 | Periplasmic serine protease do/hhoA-like protein |
| PmCQ2_2g0088 | | | | | | ModB, partial |
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| Membrane proteins | PmCQ2_1g0666 | | Pmu_21540 | PMCN06_2233 | NT08PM_2236 | PM1230 | Penicillin-binding protein 1A |
| | | | | NT08PM_2237 | | |
| PmCQ2_4g0293 | | Pmu_13260 | PMCN06_1306 | NT08PM_1389 | PM0004 | Bicyclomycin resistance protein-1 |
| | PmCQ6_1g0027 | Pmu_21770 | | NT08PM_2255 | PM1212 | Mercuric transport protein MerT |
| | PmCQ6_C4143g0001 | | PMCN06_1416 | | | Glycoside hydrolase |
| | PmCQ6_17g0010 | | PMCN06_2075 | | | Hypothetical protein PMCN06_2075 |
| | PmCQ6_9g0003 | | | | | Tail assembly protein I |
| | PmCQ6_14g0071 | | | | | C4-dicarboxylate ABC transporter permease |
| | PmCQ6_23g0011 | | | | | Hypothetical protein, partial |
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