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International Journal of Genomics
Volume 2016, Article ID 5613862, 9 pages
Research Article

The Use of Genomics in Conservation Management of the Endangered Visayan Warty Pig (Sus cebifrons)

1Animal Breeding and Genomics Centre (ABGC), Wageningen University, 6708 PB Wageningen, Netherlands
2Department of Animal Ecology, Netherlands Institute of Ecology (NIOO-KNAW), 6708 PB Wageningen, Netherlands
3Veterinary Services, Rotterdam Zoo, 3041 JG Rotterdam, Netherlands
4San Diego Zoo Institute for Conservation Research, Escondido, CA 92027, USA

Received 24 December 2015; Accepted 7 February 2016

Academic Editor: Cino Pertoldi

Copyright © 2016 Rascha J. M. Nuijten et al. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

Supplementary Material

Supplementary Material for Nuijten et al. 2016 including a description of all species (other than Sus cebifrons) used in this study (Table S1), an overview of the cross-validation errors for the Admixture analysis (Table S2), a presentation of shared and island specific variants found in Sus cebifrons individuals (Table S3) and the number of variants in homozygous or heterozygous state, both for synonymous, non-synonymous and non-synonymous, not-tolerated variants (Table S4). Figures include the results of a PSMC analysis for the other species included in this study for comparison (Figure S1), an overview of the coverage of regions of homozygosity both for Sus cebifrons (Figure S2) and for individuals of the other species (Figure S3) and the distribution of nucleotide diversity in Sus cebifrons individuals (Figure S4).

  1. Supplementary Material