The Use of Genomics in Conservation Management of the Endangered Visayan Warty Pig (Sus cebifrons)

Table 2

Overview of number of ROHs, average length of ROHs, and nucleotide diversity outside ROHs for all Sus cebifrons individuals and other Sus individuals. Description of other Sus species is in Supplementary Material, Table S1. Asian wild boars 1 and 2 originate from north China and south China, respectively. European wild boars 1 and 2 represent populations from Italy and France, respectively.

Sample code or species name	Sex	Inbreeding; coefficient ()	# ROHs; (>20 bins)	Average length; of ROHs (kb)	Nucleotide diversity; outside ROHs (π)
02M01	M	0	34	761.43	12.5
02M02	M	0	75	1764.21	12.1
01F01	F	0.1875	110	2245.32	11.9
Kb16508	M	0.0625	132	1420.68	12.4
Kb16637	F	0	144	1860.76	12.4
Kb17528	F	0.25	193	2867.06	12.0
Kb14130	F	0	130	2563.13	12.2
Sus verrucosus	U	NA	275	3829.13	6.3
Sus barbatus	U	NA	11	1551.82	26.4
Sus celebensis	U	NA	36	2719.72	23.2
Asian domestic	M	NA	271	2796.31	30.9
Asian wild boar 1	U	NA	155	1966.39	28.9
Asian wild boar 2	U	NA	44	2120.00	33.9
Asian wild boar (Japan)	U	NA	1172	1573.41	17.5
European domestic	F	NA	493	1859.01	28.4
European wild boar 1	M	NA	592	1912.82	16.2
European wild boar 2	U	NA	708	1401.60	18.4