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International Journal of Genomics
Volume 2016, Article ID 7983236, 16 pages
Review Article

A Survey of Computational Tools to Analyze and Interpret Whole Exome Sequencing Data

1Division of Medical Oncology, Department of Medicine, School of Medicine, Aurora, CO 80045, USA
2University of Colorado Cancer Center, Aurora, CO 80045, USA
3Department of Biostatistics and Informatics, Colorado School of Public Health, University of Colorado, Anschutz Medical Campus, Aurora, CO 80045, USA

Received 25 May 2016; Accepted 26 October 2016

Academic Editor: Lam C. Tsoi

Copyright © 2016 Jennifer D. Hintzsche et al. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

Citations to this Article [7 citations]

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  • Nichelle Simmons, Maria Castaldi, Jan Vijg, Rouzan G. Karabakhtsian, Nicole E. Patterson, Jenna Marcus Zechmeister, Michal Bejerano-Sagie, Maria Delio, Kunjan Patel, Alexander Maslov, Eirwen M. Miller, John M. Greally, Dennis Y.S. Kuo, Cristina Montagna, Nivedita Ravi, and Wilber Quispe-Tintaya, “Development and validation of a targeted next generation DNA sequencing panel outperforming whole exome sequencing for the identification of clinically relevant genetic variants,” Oncotarget, vol. 8, no. 60, pp. 102033–102045, 2017. View at Publisher · View at Google Scholar
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  • Yi Fang, Jing Zeng, Yong Hu, Cheng Cao, Xiao Ma, Yanwen Jin, Jinjing Wang, and Ran Liu, “The Profile of Genetic Mutations in Papillary Thyroid Cancer Detected by Whole Exome Sequencing,” Cellular Physiology and Biochemistry, vol. 50, no. 1, pp. 179–195, 2018. View at Publisher · View at Google Scholar
  • Valérie de Crécy-Lagard, and Andrew D. Hanson, “Comparative Genomics ☆,” Reference Module in Biomedical Sciences, 2018. View at Publisher · View at Google Scholar
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  • Christos Petridis, Iteeka Arora, Vandna Shah, Anargyros Megalios, Charlotte Moss, Anca Mera, Angela Clifford, Cheryl Gillett, Sarah E. Pinder, Ian Tomlinson, Rebecca Roylance, Michael A. Simpson, and Elinor J. Sawyer, “Frequency of pathogenic germline variants in BRCA1, BRCA2, PALB2, CHEK2 and TP53 in ductal carcinoma in situ diagnosed in women under the age of 50 years,” Breast Cancer Research, vol. 21, no. 1, 2019. View at Publisher · View at Google Scholar
  • Huizi Li, Jifeng Feng, Changwen Jing, Jianzhong Wu, Ni, Yuanyuan Du, Huanhuan Sha, Xiaoyue Xu, Lou, and Shuchen Dong, “Circulating tumor DNA detection: A potential tool for colorectal cancer management,” Oncology Letters, vol. 17, no. 2, pp. 1409–1416, 2019. View at Publisher · View at Google Scholar