International Journal of Genomics / 2016 / Article / Tab 2

Research Article

Lncident: A Tool for Rapid Identification of Long Noncoding RNAs Utilizing Sequence Intrinsic Composition and Open Reading Frame Information

Table 2

Comparisons of C. elegans.

ToolsSensitivitySpecificityAccuracy-measureMCCKappa

CPC.web0.99900.98950.99420.99420.98850.9884
CPAT.web0.99100.91870.95480.95640.91200.9097
CNCI0.99380.77440.88410.89550.78730.7681
PLEK0.99870.45260.72560.78450.53870.4513
Lncident10.95450.97720.97780.95550.9545
CPAT.train0.99950.99500.99720.99730.99450.9945
PLEK.train0.97950.99500.98720.98720.97460.9745
Lncident.train0.99500.99750.99620.99620.99250.9925

For tools with default models, Lncident presented the best result among the alignment-free methods. Both Lncident and CPAT outperformed CPC by utilizing new-trained model. with model trained on human. suffix of “train” means the tools with model trained on C. elegans.

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