International Journal of Genomics / 2016 / Article / Tab 1

Research Article

RNA Sequencing of Formalin-Fixed, Paraffin-Embedded Specimens for Gene Expression Quantification and Data Mining

Table 1

Sample description and alignment statistics.

IDLibraryRaw dataAlignment
Total readsBQGCCRNon-CRCR MQNon-CR MQ

1Ribo-Zero17.8 M3171.4%27.7%72.3%3247
2Ribo-Zero16.1 M3076.8%31.4%68.6%2347
3Ribo-Zero16.8 M3170.7%31.6%68.4%2846
4Ribo-Zero14.0 M3172.3%46.0%54.0%3447
1Ribo-Zero16.1 M3170.4%27.4%72.6%3147
2Ribo-Zero14.9 M3175.4%37.9%62.1%2147
3Ribo-Zero17.6 M3171.1%29.8%70.2%2947
4Ribo-Zero15.6 M3170.0%46.1%53.9%3647
1RNase H20.2 M3551.6%79.9%20.1%4633
2RNase H20.5 M3639.8%42.6%57.4%4541
3RNase H20.4 M3551.6%78.9%21.1%4533
4RNase H21.4 M3548.6%58.0%42.0%4537
1RNase H22.1 M3552.5%80.3%19.7%4635
2RNase H22.4 M3455.1%74.7%25.3%4433
3RNase H20.6 M3552.0%78.5%21.5%4531
4RNase H24.0 M3453.6%80.1%19.9%4530

CR: coding region; BQ: base quality; MQ: mapping quality; GC: GC content.

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