HaVec: An Efficient de Bruijn Graph Construction Algorithm for Genome Assembly

Table 8

t-test results excluding 50 m.fa.

File name	Minia runtime	HaVec 5-byte mf = 1.2	HaVec 5-byte mf = 1.5	HaVec 6-byte mf = 1.2	HaVec 6-byte mf = 1.5
Ecoli_MG1655_s_6_1_bfast.fasta	100.00	86.625	0	85.875	70.25
Ecoli_MG1655_s_6_1_bfast.fasta	100.50	86.125	8.75	86.875	69.375
Ecoli_MG1655_s_6_2_bfast.fasta	1801.350	597.5	86.5	601.25	488.50
Ecoli_MG1655_s_6_2_bfast.fasta	1756.00	589.875	476.5	592.75	480.75
Human1_95G_CASAVA1.8a2_NCBI37_18Jan_chr19.sorted.fasta	2236.00	724.25	593.25	722	601.50
Human1_95G_CASAVA1.8a2_NCBI37_18Jan_chr19.sorted.fasta	2071.50	726.25	592.75	738.50	611.625
Human1_95G_CASAVA1.8a2_NCBI37_18Jan11_chr21.sorted.fasta	1087.50	449.5	370.625	444.125	371.50
Human1_95G_CASAVA1.8a2_NCBI37_18Jan11_chr21.sorted.fasta	1124.50	447.875	374.50	450.625	374.75
NA19240_GAIIx_100_chr21.fasta	832.00	621	513.50	623.625	508.625
NA19240_GAIIx_100_chr21.fasta	870.00	619.25	504.625	622.375	525.75
dataset_1_7GB.fa	1078.50	446.5	368.125	450.25	395.25
dataset_1_7GB.fa	1102.00	451.25	367	454.25	373.75
dataset_1_9GB.fa	841.50	619.875	507.125	628.375	516.0
dataset_1_9GB.fa	862.00	626	507.625	624.125	511.375
-value	NA	5.6466	5.1002	4.6367	5.0702