Transcriptome Analysis of Orange Head Chinese Cabbage (Brassica rapa L. ssp. pekinensis) and Molecular Marker Development

Table 1

Summary of read numbers.

Read category	Map to annotation gene		Map to genome
	Orange	White	Orange	White
Total reads	11,692,280	12,426,002	11,692,280	12,426,002
Total base pairs	572,921,720	608,874,098	572,921,720	608,874,098
Total mapped reads	7,816,773	8,342,444	9,609,140	10,261,712
Perfect match	5,729,753	6,140,776	7,003,617	7,518,873
≤2 bp mismatch	2,087,020	2,201,668	2,605,523	2,742,839
Unique match	7,308,446	7,787,139	8,607,533	9,166,275
Multiposition match	508,327	555,305	1,001,607	1,095,437
Total unmapped reads	3,875,507	4,083,558	2,083,140	2,164,290