International Journal of Genomics / 2017 / Article / Tab 4

Research Article

Preparing and Analyzing Expressed Sequence Tags (ESTs) Library for the Mammary Tissue of Local Turkish Kivircik Sheep

Table 4

The Blastn results of postnatal contigs.

Contig numberDescription Query coverageMax. ident.Length of contig (bp)The number of ESTs in contig

Contig 1PREDICTED: Capra hircus sperm associated antigen 8 (SPAG8), transcript variant X3, misc_RNA87%90%10152
Contig 2PREDICTED: Capra hircus collagen type III alpha 1 (LOC100860938), mRNA67%87%13322
Contig 3PREDICTED: Capra hircus nuclear protein, transcriptional regulator, 1 (NUPR1), mRNA58%95%10393
Contig 4Bos taurus eukaryotic translation elongation factor 1 alpha 1, mRNA (cDNA clone MGC: 126913, IMAGE: 7928985), complete cds95%90%199210
Contig 5Bos taurus ribosomal protein S3 (RPS3), mRNA > gb|BC102090.1| Bos taurus ribosomal protein S3, mRNA (cDNA clone MGC: 127206, IMAGE: 7945675), complete cds82%92%10742
Contig 6Solanum lycopersicum chromosome ch12, complete genome30%67%20682
Contig 7PREDICTED: Pantholops hodgsonii GTPase IMAP family member 5-like (LOC102329836), transcript variant X5, mRNA17%91%10312
Contig 8C. hircus mRNA for as1-casein83%91%10723
Contig 9Bos taurus beta-2-microglobulin (B2M), mRNA > gb|BC118352.1| Bos taurus beta-2-microglobulin, mRNA (cDNA clone MGC: 140690, IMAGE: 8275195), complete cds79%89%13832
Contig 10Ovis aries alpha-S1-casein (csn1s1), mRNA > emb|X03237.1| Sheep mRNA for alpha-S1-casein83%95%12835
Contig 11Ovis aries alpha-S2-casein (LOC443383), mRNA > emb|X03238.1| Sheep mRNA for alpha-S2-casein85%91%10424
Contig 12Ovis aries alpha-S2-casein (LOC443383), mRNA > emb|X03238.1| Sheep mRNA for alpha-S2-casein82%95%107113
Contig 13Ovis aries breed Small Tail Han Sheep thymosin beta 4, X-linked (ThymB4X) mRNA, complete cds60%95%10482
Contig 14Sheep mRNA for beta-casein79%90%148721
Contig 15PREDICTED: Bos taurus N-ethylmaleimide-sensitive factor, transcript variant 4 (NSF), mRNA80%93%11162
Contig 16Bos taurus ribosomal protein S4, X-linked (RPS4X), mRNA > gb|BC102476.1| Bos taurus ribosomal protein S4, Y-linked 2, mRNA (cDNA clone MGC: 127573, IMAGE: 7950762), complete cds84%92%10882
Contig 17Bos taurus ribosomal protein L27a, mRNA (cDNA clone MGC: 133578, IMAGE: 8058503), complete cds38%93%13612
Contig 18Bovine alpha-S2-casein type A protein (CASAS2) gene, exons 1–1866%89%10542
Contig 19Ovis aries alpha-S1-casein (csn1s1), mRNA > emb|X03237.1| Sheep mRNA for alpha-S1-casein85%93%9942
Contig 20Ovis aries casein kappa (CSN3), mRNA > emb|X51822.1| Sheep kappa-Cn mRNA for kappa-casein79%95%11053
Contig 21PREDICTED: Capra hircus 40S ribosomal protein S15-like (LOC102191702), mRNA45%96%10602
Contig 22Ovis aries clone 7 ribosomal protein SA (RPSA) pseudogene, complete sequence50%97%13182
Contig 23Bos taurus ribosomal protein S3A, mRNA (cDNA clone MGC: 127088, IMAGE: 7943245), complete cds86%91%10692
Contig 24PREDICTED: Ovis aries ribosomal protein L6 (RPL6), mRNA75%90%11502
Contig 25PREDICTED: Pantholops hodgsonii 40S ribosomal protein S25-like (LOC102318811), mRNA45%96%10792
Contig 26Bubalus bubalis alpha-S1-casein mRNA, complete cds82%93%143938
Contig 27Ovis aries cell line 1LL2 mitochondrion, complete genome79%97%10593

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