Research Article
Gene Coexpression Network Comparison via Persistent Homology
Table 1
Pathogen resistance Arabidopsis microarray data collected. This is the part of the table that appeared in [
34], and it is under CC BY 4.0 license.
| ID | GEO data set | Plant | Stress group | Stress |
| 1 | GSE12856 | Arabidopsis | PTI | Nonhost | 2 | GSE13739 | Arabidopsis | Induced resistance | Induced resistance (SA) | 3 | GSE14961 | Arabidopsis | Induced resistance | Induced resistance (SA) | 4 | GSE15236 | Arabidopsis | Fungi | Fusarium oxysporum | 5 | GSE16471 | Arabidopsis | PTI | PTI | 6 | GSE16472 | Arabidopsis | PTI | PTI | 7 | GSE16497 | Arabidopsis | Induced resistance | Induced resistance (Aphid) | 8 | GSE17382 | Arabidopsis | PTI | PTI | 9 | GSE17875 | Arabidopsis | Fungi | Botrytis cinerea | 10 | GSE19273 | Arabidopsis | Bacteria | Ralstonia solanacearum | 11 | GSE20188 | Arabidopsis | Induced resistance | Induced resistance (insecticides) | 12 | GSE21762 | Arabidopsis | Induced resistance | Induced resistance (JA) | 13 | GSE21920 | Arabidopsis | Bacteria | Pseudomonas syringae | 14 | GSE26679 | Arabidopsis | Fungi | Golovinomyces cichoracearum | 15 | GSE26973 | Arabidopsis | Induced resistance | Induced resistance (exudates) | 16 | GSE28800 | Arabidopsis | Induced resistance | Induced resistance (chemistry) | 17 | GSE431 | Arabidopsis | Fungi | Erysiphe cichoracearum | 18 | GSE5513 | Arabidopsis | Induced resistance | Induced resistance (PTI) | 19 | GSE5752 | Arabidopsis | Induced resistance | Induced resistance (SA) | 20 | GSE5753 | Arabidopsis | Induced resistance | Induced resistance (SA) | 21 | GSE5754 | Arabidopsis | Induced resistance | Induced resistance (SA) | 22 | GSE5755 | Arabidopsis | Induced resistance | Induced resistance (SA) | 23 | GSE5756 | Arabidopsis | Induced resistance | Induced resistance (SA) | 24 | GSE5757 | Arabidopsis | Induced resistance | Induced resistance (SA) | 25 | GSE5758 | Arabidopsis | Induced resistance | Induced resistance (SA) | 26 | GSE6831 | Arabidopsis | Induced resistance | SAR(JA) | 27 | GSE8319 | Arabidopsis | PTI | PTI | 28 | GSE10426 | Arabidopsis | Fungi | Plasmodiophora brassicae | 29 | GSE10713 | Arabidopsis | Fungi | Fusarium oxysporum pv. raphani | 30 | GSE13390 | Arabidopsis | Bacteria | Pseudomonas syringae pv. tomato | 31 | GSE15880 | Arabidopsis | Fungi | Botrytis cinerea | 32 | GSE15881 | Arabidopsis | Fungi | Botrytis cinerea | 33 | GSE18757 | Arabidopsis | Bacteria | Ralstonia solanacearum | 34 | GSE25838 | Arabidopsis | Fungi | Botrytis cinerea | 35 | GSE34081 | Arabidopsis | Bacteria | Pseudomonas syringae pv. tomato | 36 | GSE7990 | Arabidopsis | Induced resistance | Induced resistance (ISR, Bradyrhizobium) | 37 | GSE8877 | Arabidopsis | Fungi | Plasmodiophora brassicae | 38 | GSE31230 | Arabidopsis | Bacteria | Ralstonia solanacearum |
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