Research Article

Whole Genome Sequencing of Greater Amberjack (Seriola dumerili) for SNP Identification on Aligned Scaffolds and Genome Structural Variation Analysis Using Parallel Resequencing

Figure 3

Genome-wide landscape of structural variations of greater amberjack. We linked the BreakDancer data to Circus plots to visualize regions of the genome that contained structural variations. We combined the resequenced data of (a) eight greater amberjacks captured off the Kochi coast and (b) 12 greater amberjacks captured off the Chinese Hainan Islands coast and analyzed these data by BreakDancer. Gene density of each contig is visualized by dark lines. The outermost circle shows inversion, next circle shows insertion, and third circle shows deletion. Orange lines show intrachromosomal translocations, and blue lines show interchromosomal translocations.
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