A Robust Metatranscriptomic Technology for Population-Scale Studies of Diet, Gut Microbiome, and Human Health

Table 1

The top ten strains, species, and genera identified in 10,000 human stool samples, based on their prevalence. See supplementary materials for all taxa identified in 10,000 human stool samples (Table S2 for strain, Table S3 for species, Table S4 for genera).

Top 10 genera		Top 10 species		Top 10 strains
Genus	Prevalence (%)	Species	Prevalence (%)	Strains	Prevalence (%)
Clostridium	99.7	Bacteroides vulgatus	97.1	Eggerthella lenta 1_1_60AFAA	97.1
Bacteroides	99.6	Acinetobacter baumannii	96.8	(Eubacterium) hallii DSM 3353	93.9
Blautia	97.6	Faecalibacterium prausnitzii	96.4	Veillonella dispar ATCC 17748	92.3
Acinetobacter	97.5	Bacteroides uniformis	95.4	Anaerotruncus colihominis DSM 17241	91.4
Eubacterium	97.2	Eggerthella lenta	91.8	Clostridium phoceensis strain GD3	90.8
Parabacteroides	96.9	(Eubacterium) hallii	91.5	Blautia obeum ATCC 29174	89.7
Lactococcus	96.9	Anaerotruncus colihominis	91.4	(Eubacterium) eligens strain 2789STDY5834875	88.9
Faecalibacterium	96.4	Clostridium phoceensis	90.8	Faecalibacterium cf. prausnitzii KLE1255	88.3
Roseburia	95.7	Veillonella dispar	89.0	Faecalibacterium prausnitzii A2-165	86.0
Alistipes	95.1	Fusicatenibacter saccharivorans	87.3	Roseburia hominis A2-183	83.4