Research Article
Additional Evidence for DDB2 T338M as a Genetic Risk Factor for Ocular Squamous Cell Carcinoma in Horses
Table 2
Number of variants identified and prioritized for further evaluation based on three filtering parameters and mapping to EquCab2.
| Variants from filtering | Unique to FreeBayes | Unique to SAMtools | Identified by both variant callers | Prioritized variants |
| Filter 1 | High | 0 | 0 | 0 | 0 | Moderate | 0 | 0 | 0 | 0 | Low | 0 | 0 | 0 | 0 | Modifier | 3 | 1 | 1 | 4 | Filter 2 | High | 0 | 0 | 0 | 0 | Moderate | 0 | 1 | 1 | 2 | Low | 0 | 0 | 5 (4—synonymous) | 1 | Modifier | 38 | 47 | 299 | 17 | Filter 3 | High | 0 | 0 | 0 | 0 | Moderate | 27 | 28 | 25 | 25 | Low | 2 | 3 | 66 (55—synonymous) | 11 | Modifier | 316 | 415 | 4759 | 0 |
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