Genotyping for Blast (Pyricularia oryzae) Resistance Genes in F₂ Population of Supa Aromatic Rice (Oryza sativa L.)

Table 2

Characteristics associated with the SNP/InDel markers.

SNP/InDels

Genes

Chr

Position

Markers

Allele 1

Allele 2

Genotype 1

Genotype 2

Trait of allele 1

Trait of allele 2

Score of allele 1

Score of allele 2

Pi-ta

Pita

12

10607554

snpOS0006

A

C

A:A

C:C

Susceptible

Resistant

0

1

Pi9-1b

Pi9

6

10381489

snpOS0007b

CGATGGTTTC

—

CGATGGTTTC:CGATGGTTTC

-:-

Susceptible

Resistant

0

1

BADH2.1-7

badh2

8

20382865

snpOS0022

AAAAGATTATGGC

TATAT

AAAAGATTATGGC:AAAAGATTATGGC

TATAT:TATAT

Not fragrant

Fragrant

0

1

Key: SNP: single-nucleotide polymorphism; InDel: insertion/deletion; Chr: chromosome. Alternative alleles existing in the target loci and corresponding genotype.