International Journal of Genomics

Research Article

Comparative Transcriptome Analysis in Eggplant Reveals Selection Trends during Eggplant Domestication

Table 3

The number and ratio of the CDS, annotated genes, and mapped sequences for the six eggplants.


Sample	5 UTR^A	3 UTR^A	CDS		Total CDS ratio(%)^B	Number of unigenes annotated^C	Total mapped^D
Sample	5 UTR^A	3 UTR^A	Blast	EST Scan	Total CDS ratio(%)^B	Number of unigenes annotated^C	Total mapped^D

AET_SG	12123 (23.53%)	11626 (22.57%)	21195	18652	77.34	29118 (56.51%)	39337841 (70.78%)
INT_2006	12830 (27.99%)	12393 (27.04%)	20952	15564	79.66	28321 (61.78%)	48949822 (72.64%)
MEL_HZHQ	14230 (25.82%)	13570 (24.62%)	26867	18952	83.13	34865 (63.25%)	51659443 (87.62%)
MEL_LYQ	12908 (24.44%)	12405 (23.49%)	21749	19162	77.45	29751 (56.32%)	52647559 (88.68%)
MEL_S58	13867 (23.63%)	12992 (22.14%)	26486	20652	80.33	35659 (60.77%)	58745699 (87.12%)
SIS_2007	13523 (30.68%)	14051 (31.88%)	24478	11525	81.69	29221 (66.3%)	20027221 (27.56%)

^AThe number of 5 UTR or 3 UTR and the ratio with the unigenes. ^BThe total CDS ratio with the unigenes. ^CThe number of unigenes annotated to the database and the ratio with the all unigenes. ^DThe number of high-quality reads mapped to the reference eggplant genome and the ratio with the clean reads.