Genome-Wide Analysis of the TCP Gene Family in Switchgrass (Panicum virgatum L.)
Table 1
Overview of TCP genes in switchgrass.
Gene namea
Gene IDb
ORF length (bp)
Deduced polypeptide
Chr
Chr location
Length (aa)
MW (kDa)
pI
PvTCP1
Pavir.1KG397100
663
220
22.53
9.83
01K
63645349-63646113
PvTCP2
Pavir.1KG510200
1188
395
39.93
9.42
01K
75765762-75768115
PvTCP3
Pavir.1KG552700
681
226
23.00
9.79
01K
79521775-79523415
PvTCP4
Pavir.1NG030900
426
141
14.49
10.42
01N
3887213-3889118
PvTCP5
Pavir.1NG539700
1206
401
40.27
9.42
01N
89471749-89473804
PvTCP6
Pavir.1NG547900
663
220
22.50
10.09
01N
96987327-96989924
PvTCP7
Pavir.2KG036700
957
318
33.85
6.29
02K
5031244-5036367
PvTCP8
Pavir.2KG296300
801
266
28.62
6.05
02K
65347281-65349763
PvTCP9
Pavir.2NG040500
1293
430
45.36
9.32
02N
5718258-5719550
PvTCP10
Pavir.2NG168500
933
310
32.42
10.10
02N
32012380-32013416
PvTCP11
Pavir.2NG320400
795
264
28.39
6.21
02N
59626967-59628392
PvTCP12
Pavir.2NG441900
990
329
33.63
4.95
02N
81045305-81046294
PvTCP13
Pavir.3KG357500
870
289
30.21
8.93
03K
28804800-28807508
PvTCP14
Pavir.3KG547300
870
289
30.66
6.38
03K
69673046-69678099
PvTCP15
Pavir.3NG031100
1200
399
40.43
5.99
03N
2368139-2370112
PvTCP16
Pavir.3NG279000
864
287
30.06
5.96
03N
52604278-52608164
PvTCP17
Pavir.4KG172900
1197
398
40.38
8.97
04K
10928170-10929640
PvTCP18
Pavir.4NG098900
1173
389
39.50
7.83
04N
13829961-13832629
PvTCP19
Pavir.4NG231900
978
325
34.15
6.29
04N
19989691-19991909
PvTCP20
Pavir.5KG544700
1251
416
44.33
6.38
05K
94391370-94392775
PvTCP21
Pavir.5KG556600
837
278
29.62
8.08
05K
95365227-95369286
PvTCP22
Pavir.5KG742600
978
325
33.98
6.37
05K
113279411-113281724
PvTCP23
Pavir.5NG501800
1272
423
45.00
6.41
05N
86933569-86934999
PvTCP24
Pavir.5NG508900
531
176
18.87
9.75
05N
87491419-87493406
PvTCP25
Pavir.6KG270000
849
282
30.48
6.80
06K
55905938-55907215
PvTCP26
Pavir.6KG395100
1065
354
36.50
5.51
06K
70566109-70567758
PvTCP27
Pavir.6NG051800
1215
404
42.02
9.02
06N
10745904-10747230
PvTCP28
Pavir.6NG140000
711
236
25.40
5.61
06N
58122711-58123421
PvTCP29
Pavir.6NG344700
1329
442
45.95
8.82
06N
77613527-77615377
PvTCP30
Pavir.7KG023900
525
174
18.14
8.25
07K
23221010-23224633
PvTCP31
Pavir.7KG255700
606
201
20.79
10.01
07K
56383609-56384723
PvTCP32
Pavir.7NG066100
285
94
9.70
4.59
07N
15663289-15674390
PvTCP33ζ
Pavir.7NG333200
603
200
20.79
9.82
07N
55200631-55201233
PvTCP34
Pavir.8KG079400
1209
402
41.22
8.77
08K
9383778-9386025
PvTCP35
Pavir.8NG062800
1191
396
40.65
9.13
08N
8490834-8493093
PvTCP36
Pavir.9KG031700
1110
369
39.15
8.55
09K
2411064-2412737
PvTCP37
Pavir.9NG079800
1158
385
39.42
9.32
09N
5336448-5340260
PvTCP38
Pavir.9NG142700
1116
371
39.78
8.39
09N
13496559-13498279
PvTCP39
Pavir.J125500
582
193
19.25
10.19
scaffold14987
1395-1995
PvTCP40
Pavir.J227000
888
295
31.09
8.91
scaffold20
54419-56973
PvTCP41
Pavir.J362100
1335
444
46.34
6.78
scaffold276
1-2111
PvTCP42
Pavir.J675700
1353
450
46.78
6.67
scaffold7087
83-2442
aGene name referred to the identified PvTCP genes in switchgrass in this study. bGene ID in Phytozome v12.0 database. ζCorrected TCP genes by PCR and PviUTs database (https://switchgrassgenomics.noble.org/).
