Statistical Method Based on Bayes-Type Empirical Score Test for Assessing Genetic Association with Multilocus Genotype Data

Table 2

Empirical powers (based on all 18 SNPs) of GOLD, PChiP, SSUP, PChiB, and Min2. Each SNP is treated as the causal locus in turn, which has a recessive effect, with simulated odds ratio 1.5 and based on 1000 controls, 1000 cases, and 500 iterations.

Causal SNP no.	PChiP	SSUP	GOLD	Min2	PChiB
1	0.672	0.738	0.948	0.764	0.764
2	0.364	0.352	0.826	0.504	0.492
3	0.678	0.768	0.954	0.784	0.796
4	0.748	0.826	0.972	0.846	0.842
5	0.428	0.394	0.816	0.546	0.534
6	0.642	0.704	0.926	0.726	0.732
7	0.588	0.638	0.932	0.736	0.73
8	0.048	0.042	0.186	0.054	0.024
9	0.42	0.366	0.81	0.506	0.524
10	0.348	0.168	0.778	0.372	0.286
11	0.398	0.186	0.844	0.378	0.2
12	0.434	0.4	0.812	0.554	0.542
13	0.586	0.642	0.938	0.684	0.708
14	0.428	0.426	0.836	0.54	0.522
15	0.73	0.818	0.978	0.822	0.826
16	0.678	0.746	0.972	0.78	0.808
17	0.34	0.328	0.778	0.51	0.518
18	0.71	0.768	0.954	0.802	0.794