Statistical Method Based on Bayes-Type Empirical Score Test for Assessing Genetic Association with Multilocus Genotype Data

Table 4

Empirical powers (based on all 18 SNPs) of GOLD, PChiP, SSUP, PChiB, and Min2. Each SNP is treated as the causal locus in turn, which has a dominant effect, with simulated odds ratio 1.3 and based on 1000 controls, 1000 cases, and 500 iterations.

Causal SNP no.	PChiP	SSUP	GOLD	Min2	PChiB
1	0.51	0.56	0.76	0.532	0.456
2	0.57	0.552	0.822	0.564	0.49
3	0.486	0.576	0.79	0.532	0.438
4	0.448	0.532	0.74	0.476	0.416
5	0.644	0.626	0.824	0.628	0.518
6	0.556	0.61	0.808	0.576	0.516
7	0.568	0.63	0.79	0.596	0.504
8	0.13	0.152	0.712	0.128	0.078
9	0.598	0.588	0.846	0.636	0.556
10	0.638	0.382	0.826	0.628	0.496
11	0.574	0.338	0.818	0.586	0.51
12	0.614	0.614	0.836	0.622	0.56
13	0.506	0.58	0.79	0.548	0.502
14	0.584	0.578	0.836	0.576	0.51
15	0.458	0.518	0.756	0.482	0.388
16	0.462	0.538	0.808	0.478	0.418
17	0.694	0.662	0.822	0.676	0.598
18	0.492	0.55	0.76	0.51	0.448