Statistical Method Based on Bayes-Type Empirical Score Test for Assessing Genetic Association with Multilocus Genotype Data

Table 6

Empirical powers (based on all 18 SNPs) of GOLD, PChiP, SSUP, PChiB, and Min2. Each SNP is treated as the causal locus in turn, which has an additive effect, with simulated odds ratio 1.2 and based on 1000 controls, 1000 cases, and 500 iterations.

Causal SNP no.	PChiP	SSUP	GOLD	Min2	PChiB
1	0.694	0.748	0.798	0.644	0.466
2	0.614	0.584	0.784	0.594	0.404
3	0.654	0.728	0.818	0.614	0.424
4	0.706	0.78	0.8	0.678	0.482
5	0.666	0.656	0.798	0.626	0.428
6	0.654	0.736	0.796	0.618	0.462
7	0.724	0.77	0.814	0.702	0.484
8	0.102	0.114	0.504	0.09	0.052
9	0.632	0.63	0.76	0.594	0.408
10	0.644	0.36	0.77	0.614	0.352
11	0.626	0.402	0.77	0.616	0.4
12	0.674	0.652	0.774	0.606	0.432
13	0.708	0.768	0.802	0.682	0.468
14	0.644	0.618	0.804	0.604	0.422
15	0.678	0.782	0.816	0.656	0.484
16	0.632	0.71	0.794	0.612	0.428
17	0.696	0.662	0.754	0.652	0.444
18	0.688	0.756	0.798	0.652	0.454