Research Article
FcircSEC: An R Package for Full Length circRNA Sequence Extraction and Classification
Table 2
Different types of circRNAs classified by FcircSEC.
| | Species/database name | circRNA types | Total | | Exonic (%) | Intronic (%) | Others (%) |
| | circbase | 86267 (93.39) | 695(0.75) | 5413 (5.86) | 92375 | | circRNAdb | 32690 (99.32) | 7 (0.02) | 217 (0.66) | 32914 | | Plantcircbase | | | Arabidopsis thaliana | 26643 (68.42) | 1944 (4.99) | 10351 (26.58) | 38938 | | Poncirus trifoliata | 242 (43.53) | 5 (0.90) | 309 (55.58) | 556 | | Glycine max | 2621 (49.24) | 2086 (39.19) | 616 (11.57) | 5323 | | Gossypium arboreum | 138 (13.41) | 59 (5.73) | 832 (80.86) | 1029 | | Gossypium hirsutum | 231 (46.29) | 11 (2.20) | 257 (51.50) | 499 | | Gossypium raimondii | 1231 (83.29) | 10 (0.68) | 237 (16.04) | 1478 | | Hordeum vulgare | 18 (46.15) | 1 (2.56) | 20 (51.28) | 39 | | Oryza sativa | 21849 (54.20) | 9785 (24.27) | 8677 (21.53) | 40311 | | Oryza sativa (validated) | 42 (62.69) | 0 (0) | 25 (37.31) | 67 | | Solanum lycopersicum | 1063 (55.83) | 41 (2.15) | 800 (42.02) | 1904 | | Solanum tuberosum | 584 (33.80) | 3 (0.17) | 1141 (66.03) | 1728 | | Triticum aestivum | 14 (15.91) | 2 (2.27) | 72 (81.82) | 88 | | Zea mays | 671 (20.72) | 5 (0.15) | 2562 (79.12) | 3238 |
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