| | Category | Group of gene | Name of gene |
| | Self-replication | Ribosomal RNAs | rrn4.5, rrn5, rrn16, rrn23 | | Transfer RNA genes | trnA-UGC, trnC-GCA, trnD-GUC, trnE-UUC, trnF-GAA, trnG-GCC, trnH-GUG, trnI-CAU, trnI-GAU, trnK-UUU, trnL-CAA, trnL-UAA, trnL-UAG, trnM-CAU, trnN-GUU, trnP-UGG, trnQ-UUG, trnR-ACG, trnR-UCU, trnS-GCU, trnS-GGA, trnS-UGA, trnT-GGU, trnT-UGU, trnV-GAC, trnV-UAC, trnW-CCA, trnY-GUA | | Small subunit of ribosome | rps2, rps3, rps4, rps7, rps8, rps11, rps12, rps14, rps15, rps16, rps18, rps19 | | Large subunit of ribosome | rpl2, rpl14, rpl16, rpl20, rpl22, rpl32, rpl33, rpl36 | | RNA polymerase | rpoA, rpoB, rpoC1, rpoC2 | | Translation initiation factor | infA |
| | Photosynthesis | ATP synthase | atpA, atpB, atpE, atpF, atpH, atpI | | NADH dehydrogenase subunit | ndhA, ndhB, ndhC, ndhD, ndhE, ndhF, ndhG, ndhH, ndhI, ndhJ, ndhk | | Cytochrome b/f complex subunit | petA, petB, petD, petG, petL, petN | | Photosystem subunit I subunit | psaA, psaB, psaC, psaI, psaJ | | Photosystem subunit II subunit | psbA, psbB, psbC, psbD, psbE, psbF, psbH, psbI, psbJ, psbK, psbL, psbM, psbN, psbT, psbZ | | Rubisco large subunit | rbcL |
| | Other genes | Maturase | matK | | Protease | clpP | | Envelope membrane protein | cemA | | Subunit of acetyl-CoA-carboxylase | accD | | Cytochrome c-type biogenesis protein | ccsA |
| | Genes of unknown function | Hypothetical reading frame | ycf1, ycf2, ycf3, ycf4 |
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