A Comparative Analyses of the Complete Mitochondrial Genomes of Fungal Endosymbionts in Sogatella furcifera, White-Backed Planthoppers

Table 7

List of SSRs identified on fungal endosymbiont mitogenome of WBPH KR.

No.	Name	SSR type	Type	Start	End	Unit sequence	Repeat number	Genes
1	M0000001	Normal SSR	MonoSSR	4209	4219	C	11	(Intron)Cob
2	M0000002	Normal SSR	MonoSSR	5548	5558	A	11	Cob
3	M0000003	Normal SSR	MonoSSR	22314	22323	T	10	Large subunit ribosomal RNA
4	M0000004	Normal SSR	MonoSSR	22482	22492	T	11	Large subunit ribosomal RNA
5	M0000005	Normal SSR	MonoSSR	28442	28451	T	10
6	M0000006	Normal SSR	MonoSSR	32715	32728	C	14
7	M0000007	Normal SSR	MonoSSR	38315	38327	G	13
8	M0000008	Normal SSR	MonoSSR	40035	40044	T	10	NAD4
9	D0000001	Normal SSR	DiSSR	5788	5797	TA	5	(Intron)Cob
10	D0000002	Normal SSR	DiSSR	13708	13721	AT	7	(Intron)COX2
11	D0000003	Normal SSR	DiSSR	20068	20077	AT	5	Large subunit ribosomal RNA
12	D0000004	Normal SSR	DiSSR	20646	20657	AT	6	(Intron)large subunit ribosomal RNA
13	D0000005	Normal SSR	DiSSR	27266	27275	TA	5	Large subunit ribosomal RNA
14	D0000006	Normal SSR	DiSSR	37995	38004	TA	5	ATP synthase F0 subunit a
15	D0000007	Normal SSR	DiSSR	40430	40441	AT	6	NAD1
16	D0000008	Normal SSR	DiSSR	55352	55361	TA	5
17	T0000001	Normal SSR	TriSSR	35829	35840	ATT	4
18	T0000002	Normal SSR	TriSSR	52780	52791	ATA	4	(Intron)COX1
19	Te0000001	Normal SSR	TetraSSR	24721	24732	ATTT	3	Large subunit ribosomal RNA
20	Te0000002	Normal SSR	TetraSSR	42598	42609	TTTA	3
21	Te0000003	Normal SSR	TetraSSR	48477	48488	ATAA	3	(Intron)COX1
22	Te0000004	Normal SSR	TetraSSR	52709	52720	AATA	3	(Intron)COX1
23	P0000001	Potential SSR	PentaSSR	586	595	TTGT	2	(Intron)Cob
24	P0000002	Potential SSR	PentaSSR	1923	1932	TAATA	2	(Intron)Cob
25	P0000003	Potential SSR	PentaSSR	3523	3532	TAAAA	2	(Intron)Cob
26	P0000004	Potential SSR	PentaSSR	4116	4125	TTGTC	2	(Intron)Cob
27	P0000005	Potential SSR	PentaSSR	5068	5077	ATAAT	2	(Intron)Cob
28	P0000006	Potential SSR	PentaSSR	6540	6549	TAATG	2	(Intron)Cob
29	P0000007	Potential SSR	PentaSSR	6646	6655	ATTTT	2	(Intron)Cob
30	P0000008	Potential SSR	PentaSSR	6714	6723	TTTT	2	(Intron)Cob
31	P0000009	Potential SSR	PentaSSR	7636	7645	AGCAA	2	LAGLIDADG/HNH endonuclease, (Intron)Cob
32	P0000010	Potential SSR	PentaSSR	9109	9118	AAGTT	2	NAD5
33	P0000011	Potential SSR	PentaSSR	9264	9273	ATAA	2	NAD5
34	P0000012	Potential SSR	PentaSSR	10305	10314	AGACA	2	NAD5
35	P0000013	Potential SSR	PentaSSR	10857	10866	ATTCA	2
36	P0000014	Potential SSR	PentaSSR	11369	11378	AGATA	2	COX2
37	P0000015	Potential SSR	PentaSSR	12511	12520	TTATA	2	(Intron)COX2
38	P0000016	Potential SSR	PentaSSR	12600	12609	TAAGA	2	(Intron)COX2
39	P0000017	Potential SSR	PentaSSR	12710	12719	AAGCG	2	(Intron)COX2
40	P0000018	Potential SSR	PentaSSR	12796	12805	TTAAC	2	(Intron)COX2
41	P0000019	Potential SSR	PentaSSR	13303	13312	TAATA	2	COX2
42	P0000020	Potential SSR	PentaSSR	14946	14955	AAAAG	2	NAD3
43	P0000021	Potential SSR	PentaSSR	16747	16756	TCGAG	2	(Intron)NAD2
44	P0000022	Potential SSR	PentaSSR	17383	17392	TCATT	2	NAD2
45	P0000023	Potential SSR	PentaSSR	17427	17436	AATAA	2	NAD2
46	P0000024	Potential SSR	PentaSSR	17514	17523	AAATG	2	NAD2
47	P0000025	Potential SSR	PentaSSR	17685	17694	AATAA	2	NAD2
48	P0000026	Potential SSR	PentaSSR	18083	18092	AATAC	2	NAD2
49	P0000027	Potential SSR	PentaSSR	18109	18118	TATT	2	NAD2
50	P0000028	Potential SSR	PentaSSR	18121	18130	ATAGA	2	NAD2
51	P0000029	Potential SSR	PentaSSR	18400	18409	TTATG	2
52	P0000030	Potential SSR	PentaSSR	18819	18828	GATA	2
53	P0000031	Potential SSR	PentaSSR	19078	19087	ATTTT	2
54	P0000032	Potential SSR	PentaSSR	19190	19199	TTGTA	2
55	P0000033	Potential SSR	PentaSSR	19302	19311	ATAAT	2
56	P0000034	Potential SSR	PentaSSR	19613	19622	AACT	2
57	P0000035	Potential SSR	PentaSSR	19629	19638	TATT	2
58	P0000036	Potential SSR	PentaSSR	19904	19913	TAGAC	2	tRNA-Glu
59	P0000037	Potential SSR	PentaSSR	20384	20393	TTATT	2	Large subunit ribosomal RNA
60	P0000038	Potential SSR	PentaSSR	20968	20977	TTATT	2	RPS3, (Intron)large subunit ribosomal RNA
61	P0000039	Potential SSR	PentaSSR	21146	21155	TGTAT	2	RPS3, (Intron)large subunit ribosomal RNA
62	P0000040	Potential SSR	PentaSSR	21173	21182	TATTA	2	RPS3, (Intron)large subunit ribosomal RNA
63	P0000041	Potential SSR	PentaSSR	21730	21739	TTATT	2	RPS3, (Intron)large subunit ribosomal RNA
64	P0000042	Potential SSR	PentaSSR	22038	22047	TTTTA	2	(Intron)large subunit ribosomal RNA
65	P0000043	Potential SSR	PentaSSR	22121	22130	TTATT	2	(Intron)large subunit ribosomal RNA
66	P0000044	Potential SSR	PentaSSR	22606	22615	TAATA	2	Large subunit ribosomal RNA
67	P0000045	Potential SSR	PentaSSR	23512	23521	AAGAC	2	Large subunit ribosomal RNA
68	P0000046	Potential SSR	PentaSSR	23962	23971	TTTTC	2	Large subunit ribosomal RNA
69	P0000047	Potential SSR	PentaSSR	24453	24462	AATTA	2	Large subunit ribosomal RNA
70	P0000048	Potential SSR	PentaSSR	24501	24510	ATTTA	2	Large subunit ribosomal RNA
71	P0000049	Potential SSR	PentaSSR	25211	25220	TTTAC	2	Large subunit ribosomal RNA
72	P0000050	Potential SSR	PentaSSR	25357	25366	TTTT	2	Large subunit ribosomal RNA
73	P0000051	Potential SSR	PentaSSR	26181	26190	CATTT	2	(Intron)large subunit ribosomal RNA
74	P0000052	Potential SSR	PentaSSR	27224	27233	ATTTC	2	Large subunit ribosomal RNA
75	P0000053	Potential SSR	PentaSSR	27700	27709	TTAAG	2	NAD6
76	P0000054	Potential SSR	PentaSSR	27844	27853	ATAAT	2	NAD6
77	P0000055	Potential SSR	PentaSSR	28013	28022	TAAAA	2	NAD6
78	P0000056	Potential SSR	PentaSSR	29119	29128	TCCCC	2
79	P0000057	Potential SSR	PentaSSR	29273	29282	CAGTA	2	COX3
80	P0000058	Potential SSR	PentaSSR	29973	29982	TGAT	2	Intron-encoded endonuclease aI1, (Intron)COX3
81	P0000059	Potential SSR	PentaSSR	30860	30869	AGTG	2	(Intron)COX3
82	P0000060	Potential SSR	PentaSSR	32618	32627	TCCCC	2
83	P0000061	Potential SSR	PentaSSR	33397	33406	TAAAT	2
84	P0000062	Potential SSR	PentaSSR	33416	33425	ATGGT	2
85	P0000063	Potential SSR	PentaSSR	33916	33925	AGAGA	2
86	P0000064	Potential SSR	PentaSSR	34842	34851	AATT	2	Small subunit ribosomal RNA
87	P0000065	Potential SSR	PentaSSR	36680	36689	TTAAA	2	(Intron)ATP synthase F0 subunit a
88	P0000066	Potential SSR	PentaSSR	36993	37002	TTAAA	2	(Intron)ATP synthase F0 subunit a
89	P0000067	Potential SSR	PentaSSR	37021	37030	ATTTT	2	(Intron)ATP synthase F0 subunit a
90	P0000068	Potential SSR	PentaSSR	37070	37079	AAGGA	2	(Intron)ATP synthase F0 subunit a
91	P0000069	Potential SSR	PentaSSR	37736	37745	ATTTG	2	ATP synthase F0 subunit a
92	P0000070	Potential SSR	PentaSSR	38246	38255	TATTT	2
93	P0000071	Potential SSR	PentaSSR	38820	38829	ACAAT	2	NAD4
94	P0000072	Potential SSR	PentaSSR	38940	38949	ATAAA	2	NAD4
95	P0000073	Potential SSR	PentaSSR	40209	40218	TTCAG	2	NAD1
96	P0000074	Potential SSR	PentaSSR	40498	40507	AATAC	2	NAD1
97	P0000075	Potential SSR	PentaSSR	40724	40733	GTTA	2	(Intron)NAD1
98	P0000076	Potential SSR	PentaSSR	41115	41124	AATGG	2	(Intron)NAD1
99	P0000077	Potential SSR	PentaSSR	41463	41472	AATAT	2	NAD1
100	P0000078	Potential SSR	PentaSSR	41867	41876	TACAA	2	(Intron)NAD1
101	P0000079	Potential SSR	PentaSSR	41973	41982	ATATT	2	NAD1
102	P0000080	Potential SSR	PentaSSR	42415	42424	TAGTT	2	(Intron)NAD1
103	P0000081	Potential SSR	PentaSSR	43163	43172	TACAC	2	(Intron)COX1
104	P0000082	Potential SSR	PentaSSR	43808	43817	TATTT	2	LAGLIDADG endonuclease (QPC56057.1), (Intron)COX1
105	P0000083	Potential SSR	PentaSSR	44007	44016	AATTT	2	LAGLIDADG endonuclease (QPC56057.1), (Intron)COX1
106	P0000084	Potential SSR	PentaSSR	44079	44088	ATAT	2	LAGLIDADG endonuclease (QPC56057.1), (Intron)COX1
107	P0000085	Potential SSR	PentaSSR	44160	44169	TTATA	2	LAGLIDADG endonuclease (QPC56057.1), (Intron)COX1
108	P0000086	Potential SSR	PentaSSR	44359	44368	TAATT	2	LAGLIDADG endonuclease (QPC56057.1), (Intron)COX1
109	P0000087	Potential SSR	PentaSSR	47717	47726	TGTTT	2	LAGLIDADG endonuclease (QPC56054.1), (Intron)COX1
110	P0000088	Potential SSR	PentaSSR	48411	48420	ATATA	2	(Intron)COX1
111	P0000089	Potential SSR	PentaSSR	48965	48974	TATAT	2	LAGLIDADG endonuclease (QPC56060.1), (Intron)COX1
112	P0000090	Potential SSR	PentaSSR	49852	49861	TATTT	2	LAGLIDADG endonuclease (QPC56055.1), (Intron)COX1
113	P0000091	Potential SSR	PentaSSR	50038	50047	ATAAA	2	LAGLIDADG endonuclease (QPC56055.1), (Intron)COX1
114	P0000092	Potential SSR	PentaSSR	50572	50581	AAATA	2	LAGLIDADG endonuclease (QPC56055.1), (Intron)COX1
115	P0000093	Potential SSR	PentaSSR	50686	50695	CATAG	2	LAGLIDADG endonuclease (QPC56055.1), (Intron)COX1
116	P0000094	Potential SSR	PentaSSR	50901	50910	TATTT	2	LAGLIDADG endonuclease (QPC56059.1), (Intron)COX1
117	P0000095	Potential SSR	PentaSSR	52105	52114	ATAG	2	(Intron)COX1
118	P0000096	Potential SSR	PentaSSR	52165	52174	TATTT	2	(Intron)COX1
119	P0000097	Potential SSR	PentaSSR	53150	53159	TTTAC	2	(Intron)COX1
120	P0000098	Potential SSR	PentaSSR	53214	53223	ATAT	2	(Intron)COX1
121	P0000099	Potential SSR	PentaSSR	53261	53270	TTATA	2	(Intron)COX1
122	P0000100	Potential SSR	PentaSSR	53525	53534	ATATT	2	(Intron)COX1
123	P0000101	Potential SSR	PentaSSR	55085	55094	ATAT	2	COX1
124	H0000001	Potential SSR	HexaSSR	1409	1420	ATTTAG	2	(Intron)Cob
125	H0000002	Potential SSR	HexaSSR	1544	1555	GAATTA	2	(Intron)Cob
126	H0000003	Potential SSR	HexaSSR	1819	1830	TTAATC	2	(Intron)Cob
127	H0000004	Potential SSR	HexaSSR	2353	2364	ATTTT	2	(Intron)Cob
128	H0000005	Normal SSR	HexaSSR	2548	2565	AAATAT	3	Cob
129	H0000006	Potential SSR	HexaSSR	2996	3007	TTTTTA	2	(Intron)Cob
130	H0000008	Potential SSR	HexaSSR	5935	5946	TTTATT	2	(Intron)Cob
131	H0000009	Potential SSR	HexaSSR	6512	6523	TAAATC	2	(Intron)Cob
132	H0000011	Potential SSR	HexaSSR	7506	7517	GATTA	2	LAGLIDADG/HNH endonuclease, (Intron)Cob
133	H0000012	Potential SSR	HexaSSR	8965	8976	AACTA	2	NAD5
134	H0000013	Potential SSR	HexaSSR	9972	9983	ATCCC	2	NAD5
135	H0000014	Potential SSR	HexaSSR	12348	12359	TAAAT	2	(Intron)COX2
136	H0000015	Potential SSR	HexaSSR	12475	12486	AAAGT	2	(Intron)COX2
137	H0000016	Potential SSR	HexaSSR	13479	13490	ATTTA	2	(Intron)COX2
138	H0000017	Potential SSR	HexaSSR	17949	17960	GTTAAT	2	NAD2
139	H0000018	Potential SSR	HexaSSR	17975	17986	TAAAAA	2	NAD2
140	H0000019	Potential SSR	HexaSSR	19353	19364	TAATAC	2
141	H0000020	Potential SSR	HexaSSR	21110	21121	TTTTAA	2	RPS3, (Intron)large subunit ribosomal RNA
142	H0000023	Potential SSR	HexaSSR	22403	22414	TATGCC	2	Large subunit ribosomal RNA
143	H0000024	Potential SSR	HexaSSR	23824	23835	TCCGCA	2	Large subunit ribosomal RNA
144	H0000025	Potential SSR	HexaSSR	24585	24596	GAACT	2	Large subunit ribosomal RNA
145	H0000026	Potential SSR	HexaSSR	26510	26521	AAATA	2	(Intron)large subunit ribosomal RNA
146	H0000027	Potential SSR	HexaSSR	27040	27051	TATTTT	2	Large subunit ribosomal RNA
147	H0000028	Potential SSR	HexaSSR	27669	27680	TTTAT	2	NAD6
148	H0000029	Potential SSR	HexaSSR	28253	28264	TATTAA	2	NAD6
149	H0000030	Potential SSR	HexaSSR	31008	31019	TCTGA	2	(Intron)COX3
150	H0000031	Potential SSR	HexaSSR	34196	34207	TAGTT	2
151	H0000032	Potential SSR	HexaSSR	36802	36813	GTGTA	2	(Intron)ATP synthase F0 subunit a
152	H0000034	Potential SSR	HexaSSR	37885	37896	AGATAA	2	ATP synthase F0 subunit a
153	H0000035	Potential SSR	HexaSSR	41287	41298	ATTTAA	2	NAD1
154	H0000036	Potential SSR	HexaSSR	44425	44436	TCCATC	2	LAGLIDADG endonuclease (QPC56057.1), (Intron)COX1
155	H0000037	Potential SSR	HexaSSR	45779	45790	TCCATC	2	LAGLIDADG endonuclease (QPC56058.1), (Intron)COX1
156	H0000038	Potential SSR	HexaSSR	46175	46186	TATTTA	2	(Intron)COX1
157	H0000039	Potential SSR	HexaSSR	46345	46356	TTATT	2	(Intron)COX1
158	H0000040	Potential SSR	HexaSSR	46609	46620	TTAATA	2	(Intron)COX1
159	H0000041	Potential SSR	HexaSSR	47358	47369	ATAAAC	2	LAGLIDADG endonuclease (QPC56054.1), (Intron)COX1
160	H0000042	Potential SSR	HexaSSR	50889	50900	TTTTAA	2	LAGLIDADG endonuclease (QPC56059.1), (Intron)COX1
161	H0000043	Potential SSR	HexaSSR	53483	53494	CTTAT	2	(Intron)COX1
162	H0000044	Potential SSR	HexaSSR	54105	54116	TTACCC	2	(Intron)COX1
163	H0000045	Potential SSR	HexaSSR	55364	55375	TTCT	2
164	cHp0000001	Extended SSR	HeptaSSR	898	911	AATTATA	2	(Intron)Cob
165	cHp0000002	Extended SSR	HeptaSSR	13979	13992	AATAATA	2
166	cHp0000003	Extended SSR	HeptaSSR	15909	15922	GGTATTT	2	Hypothetical protein, (Intron)NAD2
167	cHp0000005	Extended SSR	HeptaSSR	34242	34255	TTATAA	2	Small subunit ribosomal RNA
168	cHp0000006	Extended SSR	HeptaSSR	44930	44943	ATTATT	2	(Intron)COX1
169	O0000001	Extended SSR	OctaSSR	40662	40677	TTCATAT	2	(Intron)NAD1